PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G20380.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 1058aa    MW: 116441 Da    PI: 8.049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G20380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-077768081955
                   HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OB09G20380.1 776 GFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 808
                   59*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.566319349IPR002885Pentatricopeptide repeat
PfamPF015350.54323350IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.953350384IPR002885Pentatricopeptide repeat
PfamPF015350.029352379IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.972453489IPR002885Pentatricopeptide repeat
PfamPF130412.6E-9453502IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-5456490IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.777490524IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.476525555IPR002885Pentatricopeptide repeat
PfamPF015350.047530553IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.014558592IPR002885Pentatricopeptide repeat
PfamPF130412.3E-10558604IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-7560593IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.289593628IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.963629659IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.114697731IPR002885Pentatricopeptide repeat
SuperFamilySSF474595.37E-9776825IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-5776808IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-6776812No hitNo description
Gene3DG3DSA:4.10.280.109.6E-13777827IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1058 aa     Download sequence    Send to blast
MSPYVLLFWR WIHPWLSALL PNPWRVVVFA PRNAGNKATT HEHDFLSLCT AAAKDSSSLQ  60
LHDAKPSPPS QDLRGVAEFG NFSGKSRSGR AEEHKSIGHH HHHQWTLPFA GVAQVATAAR  120
QPQTQAQERK VRVGGGGFMD SGSRSSGGAG FDDDDGLAAR REVSSSLKEL AVRREGKGEG  180
RSPHALMETE MYSRCSQPSH IHQLHARLLV SGRLSCSPSL ALALLRAACR VRATPCLRPL  240
ARHLLDQIPR PSPHLLHASA RLASRLRLPS LALRHYVALR THHPSFLPPA PAIGDVLRSV  300
RGRAAHAHAL RLTAHAGDVR FLHNTLIAMY FTCGDAQRAC LVFEGMRDRD VVSWTSLISG  360
LVQNGSPLQG LQQFAMMMRG AIRPDFVVLV TIVKAFMELY DLPGAESAHS LVVKGGFHDE  420
QDVLITLTAM YASFGCLVPA RALFDIVPPH QVNVILWNAM ISGYSKNGFA SEAVHLFKHM  480
QMVARNVVPD SITMRSVIFA CAQLGSTELA AWMEDYVCRS EYKEDVLVNT ALIDMYSKSG  540
SIAHARAVFE RMHVDDRDVV VWSALIAGYG VQGLINEACT LFEDMMSDGV RPNGVTFLGL  600
LSACNHAGAV EKGWSYFHSM KPDYGIEPQH QHYACVVDLL SRAGQLDRAY KFILNMPIKP  660
EMTVWGALLH GCKMHGHSNM AMAECAAQHI FELEQSNAGH YVQLANMYAS AGMWNQVAGM  720
RVTMREKGVT KATGCSSIEV DGEMHSFHAW DHSHPRAAEI FALLCLLSPT PTGVGGFQIL  780
RELLPHSDQK RDKATFLLEV IEYIRFLQEK VQKYETSAPE WNQENAKILP WSNIYFRSFW  840
KNSQSKGQTP GDDLPDPSQF IRNGSSSGFN FTGKPDDNHT MVTSAAASGA QEQLETDHTA  900
SVSYRSAETP TNITSMIDNQ QLIFTVIVPV TFLRPELAID EGTISLSTQY SQQYVFKNLT  960
HCYCVTLARK NALMHRLLGT LTHALESSGV DLSQASLSVQ INLGKRAVKR PGGDGSSSSK  1020
ELPNPSSNNE NMGHQLTMLG GGAEELPHST KRHKSGNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D3e-5330267317330PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G20380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018960.0AK101896.1 Oryza sativa Japonica Group cDNA clone:J033070P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.10.0pentatricopeptide repeat-containing protein At3g12770
TrEMBLJ3MYF90.0J3MYF9_ORYBR; Uncharacterized protein
STRINGOB09G20380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-39BES1-interacting Myc-like protein 2