PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G20330.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 438aa    MW: 46280.4 Da    PI: 6.0945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G20330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09267315355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OB09G20330.1 267 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 315
                   58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17262332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-11262319No hitNo description
PROSITE profilePS5088815.65264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16265331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-7267315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDMNESSEKG MESNASSGPG NGIPVEWQSQ FSSAFACQPS AVHQQHAMMD SFAAASASLW  60
AAASQNMALS SDVSAMSSAA PPRGAGFLAP VPGFLQQGLG HFPVDSGFIE RAARSTCFGA  120
SGGGMMGASA YGAADQSMGD AFGGATEGLM DHHRRNDGND KAEQEFAGNG HDELPSSEVA  180
GGDCSSKGSD SKKRRRPNEV IGADQVHSSN LPSDSANESV HSKDKGEESS PATTNGGKSK  240
GKGAKETSES QKEEYIHVRA RRGQATNSHS LAERLRREKI SERMKLLQDL VPGCSKVTGK  300
AVMLDEIINY VQSLQRQVEF LSMKLATVNP RLDLNIEGLL SKDLLRFPGV PSSSIGFSPE  360
MMHPQLQLSQ PGLIQGGAAG MANPDVFRRI IQAQLGAKDG SQMPHALNGS FSDVSQMAYP  420
SLGSQDLSIR PSQDGFQM
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G20330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696518.10.0PREDICTED: transcription factor bHLH49
TrEMBLJ3MYF40.0J3MYF4_ORYBR; Uncharacterized protein
STRINGOB09G20330.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-58bHLH family protein