PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G19960.1

Common Name

LOC102720176

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 347aa MW: 36651.3 Da PI: 6.7366

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G19960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.8e-13	137	188	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P++ ++++ + a+i+ A++++k+L+ OB09G19960.1 137 QRMTHIAVERNRRKQMNEYLAVLRGLMPPS---YAQRGDQASIVGGAINFVKELE 188 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.07E-13	135	192	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-13	135	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-17	136	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.466	136	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-10	137	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-9	142	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MALEAVLHSR GLFGRRCAME GGGGVGGGGG GGGGGWSGGL FGGFEGVMDL DGGNWDAAAC 60 SSMLLHGFQE LEIPVAAAVA PAPPGEHAVV VAAAGCAENA GGIGGGHQED QATAVQARRR 120 KRRRARAAKN REEVESQRMT HIAVERNRRK QMNEYLAVLR GLMPPSYAQR GDQASIVGGA 180 INFVKELEQL LQSLEARKSS RQCAARDAAA PFAGFFTFPQ YSMSATVAAP AVNDDVRDDG 240 GASAEAEASG SKPSAVADVE VTMVESHANL RVLSRRRPRQ LLRLVVALQG HRLTVLHLNM 300 TSAGHMVLYS FSLKVEDDCQ HTSVDEIATA VHQIIEKIQE EQGCSLD

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MALEAVLHSR GLFGRRCAME GGGGVGGGGG GGGGGWSGGL FGGFEGVMDL DGGNWDAAAC  60
SSMLLHGFQE LEIPVAAAVA PAPPGEHAVV VAAAGCAENA GGIGGGHQED QATAVQARRR  120
KRRRARAAKN REEVESQRMT HIAVERNRRK QMNEYLAVLR GLMPPSYAQR GDQASIVGGA  180
INFVKELEQL LQSLEARKSS RQCAARDAAA PFAGFFTFPQ YSMSATVAAP AVNDDVRDDG  240
GASAEAEASG SKPSAVADVE VTMVESHANL RVLSRRRPRQ LLRLVVALQG HRLTVLHLNM  300
TSAGHMVLYS FSLKVEDDCQ HTSVDEIATA VHQIIEKIQE EQGCSLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	123	RRRKRRR
2	119	123	RKRRR
3	137	148	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G19960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005399	1e-152	AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBank	AP005574	1e-152	AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBank	AP014965	1e-152	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-152	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660722.1	0.0	PREDICTED: transcription factor bHLH94-like
Swissprot	Q9C7T4	6e-74	BH096_ARATH; Transcription factor bHLH96
TrEMBL	J3MYB7	0.0	J3MYB7_ORYBR; Uncharacterized protein
STRING	OB09G19960.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-52	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	102720176

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]