PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G16810.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 374aa    MW: 42614.6 Da    PI: 11.728
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G16810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer57.14.1e-183775441
   ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaal 41
                  ++Y+eClkNhAaslGgha+DGCgEfmps+ ++ +++++l
  OB09G16810.1 37 TVYRECLKNHAASLGGHALDGCGEFMPSPAANaADPTSL 75
                  78**************************99887777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.1E-143768IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-173976IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-143975IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.07139214IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEAMDVKYKP LVFPNGAIKK AVKPAAVAPA VGLGGETVYR ECLKNHAASL GGHALDGCGE  60
FMPSPAANAA DPTSLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXEARRG HRRRVVPRHR RRQGRLQGLD AQQQAQLPRR  240
PQRPTQRLLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXPPPHHS TPPPLLPLPP PTTPHPLPTP PTSTSTEHPP PPPPLPLPPP ATQRTELRRR  360
NPHKAREKET SSLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G16810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0695001e-85AK069500.1 Oryza sativa Japonica Group cDNA clone:J023022H01, full insert sequence.
GenBankAP0056361e-85AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149651e-85AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-85CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-15zinc finger homeodomain 1