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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OB08G30610.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 336aa MW: 36480.5 Da PI: 8.3889 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB08G30610.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.6 | 2.7e-07 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
OB08G30610.1 164 HYCQVCGKGFKRDANLRMHMRAH 186
68*******************99 PP
|
| 2 | zf-C2H2 | 12.5 | 0.00045 | 251 | 274 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23
y+C+ Cg k+Fs s+L++H + +
OB08G30610.1 251 YVCNRCGrKHFSVLSDLRTHEKHC 274
9*******************9876 PP
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| 3 | zf-C2H2 | 11.2 | 0.0012 | 283 | 298 | 6 | 21 |
TTEEESSHHHHHHHHH CS
zf-C2H2 6 CgksFsrksnLkrHir 21
Cg+sFsrk+ L+ H+
OB08G30610.1 283 CGTSFSRKDKLVGHLA 298
**************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MAMVAASMAW TARAVFMADQ PHCHALLYNL SVLKDRVQQL HPLVVLAVGH NGPLDVSGAD 60
AIIQEIVAAA SSMMYAFQLL CDLGTAPSGP PQEGAAVKTN DDHHGGQMVT DQDDHLMQWQ 120
QNGSQHDYSS HAHAPPVMFS GGETAATDTI IELDAAELLA KFTHYCQVCG KGFKRDANLR 180
MHMRAHGDEY KSKAALSNPA KGGGEEGAAA RKYSCPQEGC RWNRRHAKFQ PLKSVICAKN 240
HYKRSHCPKM YVCNRCGRKH FSVLSDLRTH EKHCGDHRWL CSCGTSFSRK DKLVGHLALF 300
AGHQPVMPLD AKRQRSSASV AGNVDGTSAI GMGAAA
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063290 | 0.0 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. |
| GenBank | AP004587 | 0.0 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. |
| GenBank | AP005544 | 0.0 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. |
| GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
