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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OB08G28690.1 |
Common Name | LOC102713488 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 525aa MW: 57406.7 Da PI: 9.9843 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OB08G28690.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 61 | 2.7e-19 | 366 | 416 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr+++ +g+W+AeIrdp+ + +r++lg+ taeeAa+a++aa+ +++g
OB08G28690.1 366 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTLHTAEEAARAYDAAAVRFKG 416
68********.**********64....55**********************99877 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 525 aa
Download sequence Send
to blast |
MSSSAWWAHG RIRILLPALF LAPALFFLLS PPSSPPFFTA PAAREESRSG SRVIWAQRRV 60 VEWRPCGWWR AAMPAPSRRN GYIRIDCYGG LNQLRRDLCD GIAVARLLNA TMVLPKFEVA 120 AYWNESSGFA DVFDVDYFIQ QTRGYVEVVK DMPEQIASKE PFKVDCSKRK GHFDYVETVL 180 PALLEHQYIS LTPAMSQRRD SAIEAARGED RKALTAKGTR VDRLREASDQ GHHHRRRKRE 240 EEASSPPRHD DEPPPTQRPV GTTATTAGAR VSGGGGGGVW RSSVVAEDVE LAVIVAALTH 300 VISSTAAEPT TAVPPVTAAQ QRAATATMFG QQGMHQRGFP LPSSGSAAAT PSPLPEQHQQ 360 GAVARPRYRG VRQRPWGKWA AEIRDPVKAA RVWLGTLHTA EEAARAYDAA AVRFKGSKAK 420 VNFPDQVFAA SRHVQLPQRH HHHLAAAGTA AVAPKEEFPD LSRYAHILQS GDVEYGFHAA 480 GPAGLTPPGQ SSSSSSMPPA PPSEDHRGED LNQEKKPRFG PSNLI
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY341827 | 0.0 | AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds. |