PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G27680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 104aa MW: 11484.3 Da PI: 12.3952 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 26 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 g +GVr++ +grW+AeIr+p g + r ++g+f + Aa a++aa +++g+ OB08G27680.1 26 GLRGVRRRL-WGRWAAEIRVP---G-TqSRLWIGTFPCPRTAALAYDAALYCFHGH 76 579***877.**********8...3.35**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.112 | 26 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-10 | 27 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 27 | 38 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-15 | 27 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-21 | 28 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-16 | 28 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
RRRRLLPVLA SLHHGATAAA PPKNLGLRGV RRRLWGRWAA EIRVPGTQSR LWIGTFPCPR 60 TAALAYDAAL YCFHGHSPPG GRAFNFPFAP RRLYIDARSS SAGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G27680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660297.1 | 3e-67 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q9C9I8 | 3e-19 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | J3MUI7 | 3e-67 | J3MUI7_ORYBR; Uncharacterized protein | ||||
STRING | OB08G27680.1 | 6e-68 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 7e-14 | ERF family protein |
Publications ? help Back to Top | |||
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