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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB08G27360.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LBD |
| Protein Properties |
Length: 234aa MW: 25873.6 Da PI: 6.2594 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB08G27360.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 115.1 | 4.5e-36 | 68 | 166 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
+CaaC++lrr+Ca+dCvlap fpa++p+++ +vh +FGasnv +ll++lp er +a++++++eA +r++dPvyG++g+i++lq +++ ++ ela++
OB08G27360.1 68 RCAACRYLRRRCADDCVLAPFFPASRPHRYFCVHTVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQDEIRAVQCELART 164
6*********************************************************************************************998 PP
DUF260 98 ke 99
++
OB08G27360.1 165 QA 166
76 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MDSSITRLQL ADLLLPCMPC KYIRWKDLGV SSPNPAKIVR SKTGDIMPEN DDDDDRPPPP 60
PPHPAARRCA ACRYLRRRCA DDCVLAPFFP ASRPHRYFCV HTVFGASNVA RLLQSLPMAE 120
RGNAANTMAM EAYWRVQDPV YGCTGIINRL QDEIRAVQCE LARTQALLAI ALAAAASRQL 180
QPPPPPPPQQ DRAGGRPVVV VVRGQQQQEE EEEQSPPAPS LMDPADEYLN LDGL
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK107078 | 7e-68 | AK107078.1 Oryza sativa Japonica Group cDNA clone:002-121-F06, full insert sequence. |
| GenBank | AP004708 | 7e-68 | AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12. |
| GenBank | AP004761 | 7e-68 | AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03. |
| GenBank | AP014964 | 7e-68 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 7e-68 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
