PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G26810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28883.7 Da PI: 8.601 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.7e-13 | 145 | 190 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq OB08G26810.1 145 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 190 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.281 | 139 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-16 | 142 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.82E-12 | 143 | 194 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-15 | 144 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-13 | 145 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 145 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MYGSPVSKDL NLPVQPPMSS SGLLRYRSAP SSLLGEFCDD FLPPAPRAAS PDAADNVFSR 60 FLADHQIRDN SGWEESSLMP ENISGVKRQR ESSEPAQNGG GGLAHQFSLP KTSSEMAAIE 120 KFLQFQDAVP CKIRAKRGCA THPRSIAERV RRTRISERIR KLQELVPNMD KQTNTADMLD 180 LAVDYIKDLQ KQVKVLSDSR ASCTCSAKRH TEEKLVCQAL HKQKGQWSSG IIRIHQSDEG 240 KEEQKEEHRE KGPAMGGTIV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G26810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF465824 | 1e-176 | AF465824.1 Oryza sativa transcription factor RAU1 (rau1) mRNA, partial cds. | |||
GenBank | AK100106 | 1e-176 | AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695660.1 | 1e-149 | PREDICTED: transcription factor bHLH130-like | ||||
Swissprot | Q66GR3 | 2e-58 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | J3MUA0 | 0.0 | J3MUA0_ORYBR; Uncharacterized protein | ||||
STRING | OB08G26810.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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