PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G23780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 217aa MW: 24614.2 Da PI: 10.427 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.5e-12 | 45 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g OB08G23780.1 45 AFRGVTRHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAARAYDLAALKYWG 100 58******************77779888877777999999**************97 PP | |||||||
2 | AP2 | 28.7 | 3.2e-09 | 143 | 187 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaia 48 s+y+GV +++ +g+W+A+I + g +k+ +lg++ + + ka+++ OB08G23780.1 143 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYVSLIKDGKAHEK 187 89****99**********99966...3.6********987777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-15 | 44 | 110 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-19 | 45 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-12 | 45 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.505 | 45 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-9 | 46 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-5 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-5 | 90 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-5 | 143 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-6 | 143 | 181 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 9.348 | 144 | 207 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0056 | 144 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-5 | 144 | 185 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAKRRRGSSE SAAAASSDDS SSGGGGGVEA GRRQKRECPS QRSSAFRGVT RHRWTGRFEA 60 HLWDKNTWNE SQSKKGRQGA YDGEEAAARA YDLAALKYWG LDTVLNFPLS TYDEELKEME 120 GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGKWEAR IGRVFGNKYL YLGTYVSLIK 180 DGKAHEKYFG KNDTESFKRT RPFSNFGYPN WDLKKFG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G23780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106769 | 1e-164 | AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence. | |||
GenBank | HQ858820 | 1e-164 | HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696557.1 | 1e-88 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-76 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | J3MTE8 | 1e-157 | J3MTE8_ORYBR; Uncharacterized protein | ||||
STRING | OB08G23780.1 | 1e-158 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-78 | AP2 family protein |
Publications ? help Back to Top | |||
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