PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G21740.1

Common Name

LOC102711008

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 345aa MW: 38237.6 Da PI: 4.2929

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G21740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.7	7.5e-28	1	83	18	100
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +apyfpa+q+++f n+h+lFG+sn+lk+l++l++e +dam++l+y+Ae+ra+dPv G+++vi +l++ql+ + ael+++ ++ OB08G21740.1 1 MAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVIADLERQLDAETAELNTVLHH 83 59***************************************************************************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.143	1	84	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-25	1	80	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAPYFPADQQ RRFLNAHRLF GVSNILKTLR HLKPELCDDA MRTLIYQAEM RAHDPVGGCC 60 RVIADLERQL DAETAELNTV LHHLALCRQA AATGASASVA AIMPAGMLDD PCADLDVTSS 120 NQPLLLSAEQ EVVDALYANQ EPDATILHGD DGHHNQNGSQ HEQHHGQQQR LYDYFYYDST 180 TGDDVSSKPN LDINVDGMQH FDFDTGYDVE HKLELTSDQM PVVVHEPNQI HHKEFETKAA 240 PSFVDALDMR QEMVDVNTEI EVKEIVDMNA DLDVKEMVDM NVKTTMVDVN ADIDVVKTVV 300 DVNDDIGVKE ELQEVGNGKI VDAGKATQMA ESSSNCRLGL GFSSF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAPYFPADQQ RRFLNAHRLF GVSNILKTLR HLKPELCDDA MRTLIYQAEM RAHDPVGGCC  60
RVIADLERQL DAETAELNTV LHHLALCRQA AATGASASVA AIMPAGMLDD PCADLDVTSS  120
NQPLLLSAEQ EVVDALYANQ EPDATILHGD DGHHNQNGSQ HEQHHGQQQR LYDYFYYDST  180
TGDDVSSKPN LDINVDGMQH FDFDTGYDVE HKLELTSDQM PVVVHEPNQI HHKEFETKAA  240
PSFVDALDMR QEMVDVNTEI EVKEIVDMNA DLDVKEMVDM NVKTTMVDVN ADIDVVKTVV  300
DVNDDIGVKE ELQEVGNGKI VDAGKATQMA ESSSNCRLGL GFSSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-15	1	90	28	115	LOB family transfactor Ramosa2.1
5ly0_B	7e-15	1	90	28	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G21740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695812.1	0.0	PREDICTED: uncharacterized protein LOC102711008
TrEMBL	J3MSU4	0.0	J3MSU4_ORYBR; Uncharacterized protein
STRING	OB08G21740.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-23	LOB domain-containing protein 22

Link Out ? help Back to Top
Entrez Gene	102711008