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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G13890.1 | ||||||||
Common Name | LOC102720448 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 162aa MW: 17790.7 Da PI: 5.5424 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.7 | 4e-31 | 1 | 52 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OB08G13890.1 1 MRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 52 79*************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.75E-15 | 1 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 1 | 53 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-23 | 1 | 52 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-7 | 1 | 51 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MRWTSTLHAR FVHAVELLGG HDRATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTERPA 60 ASSEQADGFE NGSAGEICDE NSLDLHGGCR PEAMAAAARH GREDWSGFPS ESNTGSMQTL 120 KDMQSKSLEI LSDMNSCVSE TTSSTSELNL EFTLGRPQNR PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-17 | 1 | 54 | 5 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-17 | 1 | 54 | 5 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-17 | 1 | 54 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-17 | 1 | 54 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-17 | 1 | 54 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-17 | 1 | 54 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-17 | 1 | 54 | 5 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-17 | 1 | 54 | 5 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-17 | 1 | 54 | 5 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-17 | 1 | 54 | 5 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-17 | 1 | 54 | 5 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-17 | 1 | 54 | 5 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G13890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095689 | 1e-166 | FP095689.1 Phyllostachys edulis cDNA clone: bphylf026d19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695503.1 | 1e-119 | PREDICTED: probable transcription factor KAN2 | ||||
Swissprot | Q9C616 | 2e-38 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | J3MQL0 | 1e-117 | J3MQL0_ORYBR; Uncharacterized protein | ||||
STRING | OB08G13890.1 | 1e-118 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4721 | 36 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-40 | G2-like family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102720448 |
Publications ? help Back to Top | |||
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