 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB08G13850.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C3H |
| Protein Properties |
Length: 270aa MW: 28952.3 Da PI: 7.9261 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB08G13850.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31.5 | 2.9e-10 | 3 | 28 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f++ GtC+y +C+FaHg+
OB08G13850.1 3 FKTKLCCKFRA-GTCPYVTNCNFAHGM 28
69*********.*************95 PP
|
| 2 | zf-CCCH | 18.5 | 3.6e-06 | 76 | 101 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
yk + C+ f+ C+yGd C+F H+
OB08G13850.1 76 YKGRHCKKFYTDEGCPYGDACTFLHD 101
77888********************7 PP
|
| 3 | zf-CCCH | 43.9 | 3.9e-14 | 149 | 174 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
OB08G13850.1 149 WKTRICNKWEMTGYCPFGSKCHFAHG 174
8************************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.028 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.7E-14 | 2 | 35 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0014 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.38E-7 | 2 | 33 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.5E-7 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.4E-9 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-7 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.43 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.629 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.2E-17 | 144 | 178 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.53E-10 | 145 | 179 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.422 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.1E-9 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.5E-11 | 149 | 174 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MFFKTKLCCK FRAGTCPYVT NCNFAHGMEE LRKPPPNWQE IVAAHEEATE AREEHQIPIM 60
TSSGPAPGDA GSGRAYKGRH CKKFYTDEGC PYGDACTFLH DEQSKARESV AISLSPTVGA 120
AGGYNSASAA TAAASSAAAN GPAQKPSNWK TRICNKWEMT GYCPFGSKCH FAHGAAELHK 180
YGGGLVDLDS RDAASTPDSK QAAASAKAPT DTAIASTAAP PHADVYHLGV QAQRSTIVNQ 240
RSGQVQRPIQ KWKGPDKISR IYGDWIDETE
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP098377 | 1e-119 | FP098377.1 Phyllostachys edulis cDNA clone: bphyem211c22, full insert sequence. |
