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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB08G12110.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LSD |
| Protein Properties |
Length: 172aa MW: 18569.2 Da PI: 8.4985 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB08G12110.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 27.4 | 5.6e-09 | 47 | 69 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23
C+gC tlL Y rGA+++RC++C+
OB08G12110.1 47 CSGCPTLLFYNRGASNIRCPSCN 69
**********************8 PP
|
| 2 | zf-LSD1 | 25.9 | 1.6e-08 | 110 | 134 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L+ +GA+ V+Ca C V
OB08G12110.1 110 CGQCRTTLMHSPGASTVQCATCRYV 134
**********************876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MQDQLICSGC RRVVQYRRGV AGVCCPGCNT LTAVNPSAAA NMSELICSGC PTLLFYNRGA 60
SNIRCPSCNR LNSTRSANSE LQTELKSSDP ELTINGFFEA AANQIAHLTC GQCRTTLMHS 120
PGASTVQCAT CRYVNHVRDA RPQTVLVENP KTLDDKGKLV SNVVVGVTSW KR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK120454 | 1e-101 | AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence. |
| GenBank | CT830765 | 1e-101 | CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence. |
