PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G26090.1 | ||||||||
Common Name | LOC102711820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HRT-like | ||||||||
Protein Properties | Length: 617aa MW: 67867.8 Da PI: 9.117 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 57.3 | 2.6e-18 | 307 | 336 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+l+dGs C ++Pv+gRKRCe HKG+R OB07G26090.1 307 VCGVMLGDGSSCLEPPVQGRKRCELHKGRR 336 7****************************9 PP | |||||||
2 | HRT-like | 24.3 | 5.2e-08 | 533 | 561 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+++e+G +Ck++P+ gR RC eH G + OB07G26090.1 533 MCGALTENG-CCKTTPMAGRERCDEHEGIK 561 6********.8***************9866 PP | |||||||
3 | HRT-like | 52.2 | 1e-16 | 579 | 608 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ +dGs+Ck+qP+ gRKRC HKG+R OB07G26090.1 579 ICGARASDGSPCKNQPIAGRKRCPLHKGQR 608 8****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00465 | 2.7E-4 | 73 | 179 | IPR000305 | GIY-YIG nuclease superfamily |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MPAASAAVPA RLKREDCPRT KHDSLFSPWN VLVGPSDWED HAAGKEGVQR YRVLNLPENF 60 PGLYELGVAR ASDEGIRARR NGPGGVVVVY LGQADNVRAR LQQYGRTGSH LNAGSSLSSA 120 GKAGMDPQVT GNGLFREVFA RGYSMVFRCA LMGNKQQAEK TEAQLLRVFD YAWNKLQNSS 180 CRREEILIKL EQGAVNHRSS LLRRVQNFKQ EMFREKAGIK ISRNGPADVS SGIMKNMLPR 240 IRTFVGFRPQ LVNSGNDVDK EIGIHQKKTS GGNSCCNKQA RKSEGYKVKK VDVMKRKTVP 300 EQDSNTVCGV MLGDGSSCLE PPVQGRKRCE LHKGRRLGRI TINPKGSSYS YQVEIPSVES 360 IPPLTENESK SDRAPQTGEL LSKLLPATVK EPSRPRNSFE AKETETREAP IEKGTHETSG 420 IINICEAKER DNSACNNKVV LGSKTCQLHN GCEEEQFDSF EKTDLLQNEE ILHRMAGDKH 480 CGEEICHAKS QSLENQPSGR MWFELIKLQN STSTPSSKGL GCHRRVTPDV ATMCGALTEN 540 GCCKTTPMAG RERCDEHEGI KVTDASSVPF SGSSGWPSIC GARASDGSPC KNQPIAGRKR 600 CPLHKGQRAC RTPQSNE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G26090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102792 | 0.0 | AK102792.1 Oryza sativa Japonica Group cDNA clone:J033107P15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694489.1 | 0.0 | PREDICTED: uncharacterized protein LOC102711820 | ||||
TrEMBL | J3MMH7 | 0.0 | J3MMH7_ORYBR; Uncharacterized protein | ||||
STRING | OB07G26090.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7948 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 4e-61 | effector of transcription2 |
Link Out ? help Back to Top | |
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Entrez Gene | 102711820 |