PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G26090.1
Common NameLOC102711820
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HRT-like
Protein Properties Length: 617aa    MW: 67867.8 Da    PI: 9.117
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G26090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like57.32.6e-18307336130
      HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                   +CGv+l+dGs C ++Pv+gRKRCe HKG+R
  OB07G26090.1 307 VCGVMLGDGSSCLEPPVQGRKRCELHKGRR 336
                   7****************************9 PP
2HRT-like24.35.2e-08533561130
      HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                   +CG+++e+G +Ck++P+ gR RC eH G +
  OB07G26090.1 533 MCGALTENG-CCKTTPMAGRERCDEHEGIK 561
                   6********.8***************9866 PP
3HRT-like52.21e-16579608130
      HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                   iCG++ +dGs+Ck+qP+ gRKRC  HKG+R
  OB07G26090.1 579 ICGARASDGSPCKNQPIAGRKRCPLHKGQR 608
                   8****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004652.7E-473179IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MPAASAAVPA RLKREDCPRT KHDSLFSPWN VLVGPSDWED HAAGKEGVQR YRVLNLPENF  60
PGLYELGVAR ASDEGIRARR NGPGGVVVVY LGQADNVRAR LQQYGRTGSH LNAGSSLSSA  120
GKAGMDPQVT GNGLFREVFA RGYSMVFRCA LMGNKQQAEK TEAQLLRVFD YAWNKLQNSS  180
CRREEILIKL EQGAVNHRSS LLRRVQNFKQ EMFREKAGIK ISRNGPADVS SGIMKNMLPR  240
IRTFVGFRPQ LVNSGNDVDK EIGIHQKKTS GGNSCCNKQA RKSEGYKVKK VDVMKRKTVP  300
EQDSNTVCGV MLGDGSSCLE PPVQGRKRCE LHKGRRLGRI TINPKGSSYS YQVEIPSVES  360
IPPLTENESK SDRAPQTGEL LSKLLPATVK EPSRPRNSFE AKETETREAP IEKGTHETSG  420
IINICEAKER DNSACNNKVV LGSKTCQLHN GCEEEQFDSF EKTDLLQNEE ILHRMAGDKH  480
CGEEICHAKS QSLENQPSGR MWFELIKLQN STSTPSSKGL GCHRRVTPDV ATMCGALTEN  540
GCCKTTPMAG RERCDEHEGI KVTDASSVPF SGSSGWPSIC GARASDGSPC KNQPIAGRKR  600
CPLHKGQRAC RTPQSNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G26090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027920.0AK102792.1 Oryza sativa Japonica Group cDNA clone:J033107P15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694489.10.0PREDICTED: uncharacterized protein LOC102711820
TrEMBLJ3MMH70.0J3MMH7_ORYBR; Uncharacterized protein
STRINGOB07G26090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.14e-61effector of transcription2