PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G25880.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 525aa    MW: 56697.8 Da    PI: 6.0617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G25880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32143200260
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                   +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  OB07G25880.1 143 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 200
                   8****************************************.***************85 PP
2WRKY106.71.2e-33316374159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++dpk v++tYeg+Hnhe
  OB07G25880.1 316 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNTGCPVRKHVERASHDPKSVITTYEGKHNHE 374
                   59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-28136201IPR003657WRKY domain
PROSITE profilePS5081123.801137201IPR003657WRKY domain
SuperFamilySSF1182906.54E-25141201IPR003657WRKY domain
SMARTSM007743.6E-35142200IPR003657WRKY domain
PfamPF031061.7E-24143199IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-38301376IPR003657WRKY domain
SuperFamilySSF1182901.18E-29308376IPR003657WRKY domain
PROSITE profilePS5081138.526311376IPR003657WRKY domain
SMARTSM007741.7E-39316375IPR003657WRKY domain
PfamPF031062.0E-26317374IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAAIMSKSAN PDILPSPRDK LAGNAHEDGG SRDFEFKPHV NSSSQSVVPA LNDPQKHEPS  60
MQNESLNTAA SSNDMMIDNV PPCSRESTLT VNVSSAPNQP VGMIGLTDNV PAEVGASELH  120
QMSSSGNAIQ ETQPESVAEK SAEDGYNWRK YGQKHVKGSE NPRSYYKCTH PNCEVKKLLE  180
RSLDGQITEV VYKGRHNHPK PQPNRRLSAG AVPPNQGEER YDGVAATEDK SSNVLSNLGN  240
QVHSAGMIEP VPGSASDDDI DAGGGRPYPG DDATEDDDLE SKRRKMESAA IDAALMGKPN  300
REPRVVVQTV SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNTGCPVR KHVERASHDP  360
KSVITTYEGK HNHEVPASRN ASHEMSAPPM KPVVHPINSS MPGLGGMMRA CEPRTFANQY  420
AQAAESDTIS LDLGVGISPN HGDATNQLQS SVPDQMQYQM QSMASVYSNM GLPSMPVPTM  480
PGNAASSIYG SREEKPSEGF TFKATPMDHS ANLCYSTAGN LVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37143377878Probable WRKY transcription factor 4
2lex_A5e-37143377878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G25880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705370.0AK070537.1 Oryza sativa Japonica Group cDNA clone:J023062H03, full insert sequence.
GenBankAY3418500.0AY341850.1 Oryza sativa (japonica cultivar-group) WRKY9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695163.10.0PREDICTED: WRKY transcription factor SUSIBA2-like
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLJ3MMF60.0J3MMF6_ORYBR; Uncharacterized protein
STRINGOB07G25880.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-106WRKY family protein