PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G24850.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 51aa MW: 5634.12 Da PI: 4.193

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G24850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	26.1	9.6e-09	2	32	344	374
GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++gy++ ee+g+l lgWkd +L+++S+W+ OB07G24850.1 2 YPWKGYTLVEEDGCLKLGWKDLSLLTASSWE 32 6699**************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	3.3E-6	2	32	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 51 aa Download sequence Send to blast
MYPWKGYTLV EEDGCLKLGW KDLSLLTASS WEPTDADATA AGDAHHEDHN S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G24850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059008	3e-42	AK059008.1 Oryza sativa Japonica Group cDNA clone:001-020-H08, full insert sequence.
GenBank	AK061242	3e-42	AK061242.1 Oryza sativa Japonica Group cDNA clone:006-211-D01, full insert sequence.
GenBank	AP003866	3e-42	AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBank	AP014963	3e-42	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	3e-42	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644982.1	4e-23	scarecrow-like protein 23
TrEMBL	J3MM53	5e-29	J3MM53_ORYBR; Uncharacterized protein
STRING	OB07G24850.1	8e-30	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP52426	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	3e-14	GRAS family protein