PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G23510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 172aa MW: 19290.3 Da PI: 9.5577 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 9e-11 | 18 | 65 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +l + + +K++K++iL A++ + +L OB07G23510.1 18 SKACREKLRRDKLNERFLELGAVLEPG---KTPKMDKSAILNDAIRVMTEL 65 6789**********************9...9**************998777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-14 | 8 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.09E-8 | 12 | 70 | No hit | No description |
PROSITE profile | PS50888 | 12.9 | 14 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-14 | 17 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-8 | 18 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-9 | 20 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MATQHVSPRS ESVSQPSSKA CREKLRRDKL NERFLELGAV LEPGKTPKMD KSAILNDAIR 60 VMTELRSEAQ KLKESNQSLQ EKIKELKAEK NELRDEKQKL KAEKESLEQQ IKFLNARPSL 120 VPHPPVIPAA AFAAGQKLMM PVIGYPGFPM WQFMPPSDVD TTDDPKSCPP VA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G23510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB110196 | 1e-149 | AB110196.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 23C4AG047. | |||
GenBank | AB110223 | 1e-149 | AB110223.1 Oryza sativa Japonica Group OsMYC1 mRNA for bHLH-HALZ myc like protein, complete cds. | |||
GenBank | AK058889 | 1e-149 | AK058889.1 Oryza sativa Japonica Group cDNA clone:001-007-D03, full insert sequence. | |||
GenBank | CT830566 | 1e-149 | CT830566.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA057B18, full insert sequence. | |||
GenBank | EU837260 | 1e-149 | EU837260.1 Oryza sativa Japonica Group clone KCS222A01 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694671.1 | 1e-116 | PREDICTED: transcription factor ILR3, partial | ||||
Swissprot | Q9FH37 | 2e-68 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | J3MLR9 | 1e-122 | J3MLR9_ORYBR; Uncharacterized protein | ||||
STRING | OB07G23510.1 | 1e-122 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-67 | bHLH family protein |