PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G19430.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 378aa    MW: 40208.6 Da    PI: 8.5554
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G19430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY772.2e-24196255359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   D y+WrKYGqK++ g++f+r+YYrC+ a   gC+++k+v++s++dp+ +eitY g H+++
  OB07G19430.1 196 DSYTWRKYGQKDILGARFARNYYRCACAqrsGCSARKHVQQSDDDPTRLEITYIGAHTCD 255
                   99***********************9887899**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.66E-22189255IPR003657WRKY domain
SMARTSM007741.0E-29194256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-24195255IPR003657WRKY domain
PROSITE profilePS5081119.921196257IPR003657WRKY domain
PfamPF031067.1E-23196255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAAVAKEWGE CAHDLRTTAV ARTMFSSGMS RMVLIGGAYL SMSWEERQRG RKGPKRVGEV  60
PGSTHALAGR AAGGGGGAAT TGWLIVRAQK STNQLKALLA KLLPAGGAAQ GAAAVEAILS  120
DMSEALSEAL ASLQAGRTMG GCRRRRRRAC WSMDEVLQRS AAAAGQCREG VVVSGEGIRA  180
DGSSRRIMLQ FGDRGDSYTW RKYGQKDILG ARFARNYYRC ACAQRSGCSA RKHVQQSDDD  240
PTRLEITYIG AHTCDDRPSP PATSPADDEQ RSTVVSHLPA VAVAAAAPST VRKLVERHVP  300
ASDMMEACTP SMEMEASWLL IPSPACSQSE LLSEAGEVPE LRPGASPPAP AERGKAWDGE  360
LLALYDSVVP DLVWRPSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-181932601579Disease resistance protein RRS1
5w3x_D5e-181932601579Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G19430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694621.11e-137PREDICTED: probable WRKY transcription factor 41
TrEMBLJ3MKL10.0J3MKL1_ORYBR; Uncharacterized protein
STRINGOB07G19430.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-21WRKY DNA-binding protein 55