PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 377aa MW: 41423.5 Da PI: 5.105

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G17730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	106	127	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk+F++ ++ H+r+H OB07G17730.1 106 ECPVCGKRFRNDKSMFGHLRSH 127 6*******************99 PP
2	zf-C2H2	13.5	0.00022	257	280	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++C++ Fs++ L H+ H OB07G17730.1 257 YTCKHCNEEFSTHQALGGHMAGnH 280 9***************99998666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0048	105	127	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.034	105	132	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.1E-4	106	127	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.97E-8	106	127	No hit	No description
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.97E-8	252	276	No hit	No description
Pfam	PF13912	2.2E-6	256	282	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0076	257	280	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.18	257	285	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	259	280	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MSKCRCILFW PSVVILQAVC CWLVVAGGNS SQQVVVAAAA SGQIGGAPEC LQDPRLSPMS 60 WHARDDLVGD DDDLADHGAA PAQQPEAEAA ADAEAGDVDL DGGEVECPVC GKRFRNDKSM 120 FGHLRSHPNR GYKGATPPLN LSTTPSSSLP AAVDDTLLLL PFRDSSNQSM LSVADVCLST 180 YEKMAACVMA TLRYRYRPRR QLQQPQAQAA AAGAGIGEVG TSSTMEGDVI HRDGRRKGKR 240 KLTKEPLREK ELKRRHYTCK HCNEEFSTHQ ALGGHMAGNH KEKRILKEAQ LARSAMILEQ 300 KQPDMNLGLK EEQPERSRLV LREKQPDVYQ DRVIDQTMDD DWEETEIDGS NAVPVAEEED 360 GHPPFGFDLN VEAPEQE

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MSKCRCILFW PSVVILQAVC CWLVVAGGNS SQQVVVAAAA SGQIGGAPEC LQDPRLSPMS  60
WHARDDLVGD DDDLADHGAA PAQQPEAEAA ADAEAGDVDL DGGEVECPVC GKRFRNDKSM  120
FGHLRSHPNR GYKGATPPLN LSTTPSSSLP AAVDDTLLLL PFRDSSNQSM LSVADVCLST  180
YEKMAACVMA TLRYRYRPRR QLQQPQAQAA AAGAGIGEVG TSSTMEGDVI HRDGRRKGKR  240
KLTKEPLREK ELKRRHYTCK HCNEEFSTHQ ALGGHMAGNH KEKRILKEAQ LARSAMILEQ  300
KQPDMNLGLK EEQPERSRLV LREKQPDVYQ DRVIDQTMDD DWEETEIDGS NAVPVAEEED  360
GHPPFGFDLN VEAPEQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	240	RRKGKRK
2	234	241	RRKGKRKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G17730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015694606.1	0.0	PREDICTED: uncharacterized protein LOC107304538
TrEMBL	J3MK41	0.0	J3MK41_ORYBR; Uncharacterized protein
STRING	OB07G17730.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13916	20	28

Link Out ? help Back to Top
Entrez Gene	107304538