PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G14160.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 417aa    MW: 47265.3 Da    PI: 9.6531
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G14160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.3e-17103202199
                   EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                   f+k+lt  dv  ++++v p + a++     ++++++++l+++d++g ++ +k++ +++ g++ l+kGW++F k+ +L +gD v+F+  +r  +++l+
  OB07G14160.1 103 FVKELTYRDVDYRDLFVAPMSAANKVfppPLEHKQTQDLSMRDLQGFRMHFKHR-ENRAGSVELRKGWRGFKKDMDLIDGDHVIFM--RRpASGQLF 196
                   89*********************999***666678889***************4.6666779************************..6779999** PP

                   EEEE-S CS
            B3  94 vkvfrk 99 
                   v+v+r+
  OB07G14160.1 197 VGVRRQ 202
                   ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1695203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1597205IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-12101201No hitNo description
SMARTSM010192.0E-4103203IPR003340B3 DNA binding domain
PfamPF023626.2E-13103202IPR003340B3 DNA binding domain
PROSITE profilePS5086310.236103203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MNKYANFWQV RPVGNLDLLP PPPRSPKKLE ISEQCPSPLT QPLVCRQEFL CRVVAVRVSA  60
SAETNEPYAA ISLKPDVVPD DDVPNPSPAP DQHHHQQPQI FYFVKELTYR DVDYRDLFVA  120
PMSAANKVFP PPLEHKQTQD LSMRDLQGFR MHFKHRENRA GSVELRKGWR GFKKDMDLID  180
GDHVIFMRRP ASGQLFVGVR RQRDVPKRVR PIKHRAKATT TVPLQEVMEA ARLAAAGVEF  240
TDGDEFVVPH KVVVEGLKVW RARLIPAMVM KFSWAVQDDA PPIVGPQGKI VRIISTRMWR  300
NLEVGWPQSS KMNRWTNFWQ VRPVFYPNLL SSSSSPSPQK KLKISETTTD LPSSSSPHPP  360
KELNIFETAT NIPSSSPPPQ PPKELNISEV AAASASMEQE ETLDELLDQL FSKPPFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-134831472343Auxin response factor 1
4ldy_B3e-134831472343Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G14160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694986.10.0PREDICTED: B3 domain-containing protein Os07g0183300/Os07g0183600-like isoform X1
SwissprotQ8H5069e-66Y7833_ORYSJ; B3 domain-containing protein Os07g0183300/Os07g0183600
TrEMBLJ3MJ340.0J3MJ34_ORYBR; Uncharacterized protein
STRINGOB07G14160.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.23e-12auxin response factor 6