 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB07G12710.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NF-YA |
| Protein Properties |
Length: 275aa MW: 30195.1 Da PI: 8.7422 |
| Description |
NF-YA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB07G12710.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | CBFB_NFYA | 42.8 | 1.8e-13 | 197 | 229 | 3 | 36 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrk 36
p+YVNaKQ+++I++RR +Rak+e+e+++ ++srk
OB07G12710.1 197 PIYVNAKQFNGIIRRRLARAKAEREHRV-SRSRK 229
9***************************.88887 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0016602 | Cellular Component | CCAAT-binding factor complex |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MRSAALSFQE HGHGLQVITS RGGNGGAAAH AMPWWVGAGS QPLLGAGEES FSQLSNAIMD 60
DSRLLQDHHH HQILASGRQL HHRAGDSSRH HFPAMPPERQ HHPPPPAESS VMKFPIISGD 120
SDLCKDMKFH ESSVPTIAAY SPLQEYQGHF ELALGQSMVC TNFCNSDQSY GVYSPYGAQA 180
MAGRMLLPPA IATDVGPIYV NAKQFNGIIR RRLARAKAER EHRVSRSRKV IRLMKMLTSS 240
ERECLHCETN QSGFANSDAG VDLVSKQSIT TKLKH
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005454 | 1e-63 | AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03. |
| GenBank | AP014963 | 1e-63 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012615 | 1e-63 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
