PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G11910.1
Common NameLOC102705451
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 347aa    MW: 38895.2 Da    PI: 5.1265
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G11910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.81.8e-48361632128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                    pGfrFhPtdeelv++yL++k++gk+l++ e+ike+diyk++P+d+  +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ +
  OB07G11910.1  36 LPGFRFHPTDEELVTFYLRRKIAGKRLSI-EIIKEMDIYKHDPSDFLkTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPICSAaG 131
                   69***************************.89*************96345556789*************************************9977 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   + ++glkk+Lv+y+g+a kg+ktdW+mhe+rl
  OB07G11910.1 132 DGAIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 163
                   788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5335193IPR003441NAC domain
PROSITE profilePS5100552.34735193IPR003441NAC domain
PfamPF023656.5E-2537163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVPSAEMKSR VFEDEVGGGV NLRGEEEEED DDDLVLPGFR FHPTDEELVT FYLRRKIAGK  60
RLSIEIIKEM DIYKHDPSDF LKTSTVGSEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT  120
GIDRPICSAA GDGAIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPPPTSSA ADSSPPPSMQ  180
EAEVWTICRI FQRNITHKRQ PQPQLAVAAA APQPDSASSI TGSVESDSNG DDVVEYMNRL  240
QAQHEQHDAP ATASNVNGGY NPHYFHDQWN SNHNMLQPAA AAPEPSPAMA AFQDHLTDHQ  300
SILSSPAPSD QYYKDGYNDD IYRMVMELAD PSLFYDHCRY LDSCTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-453719419166NO APICAL MERISTEM PROTEIN
1ut4_B5e-453719419166NO APICAL MERISTEM PROTEIN
1ut7_A5e-453719419166NO APICAL MERISTEM PROTEIN
1ut7_B5e-453719419166NO APICAL MERISTEM PROTEIN
3swm_A5e-453719422169NAC domain-containing protein 19
3swm_B5e-453719422169NAC domain-containing protein 19
3swm_C5e-453719422169NAC domain-containing protein 19
3swm_D5e-453719422169NAC domain-containing protein 19
3swp_A5e-453719422169NAC domain-containing protein 19
3swp_B5e-453719422169NAC domain-containing protein 19
3swp_C5e-453719422169NAC domain-containing protein 19
3swp_D5e-453719422169NAC domain-containing protein 19
4dul_A5e-453719419166NAC domain-containing protein 19
4dul_B5e-453719419166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G11910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658263.20.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK554e-76NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLJ3MIF90.0J3MIF9_ORYBR; Uncharacterized protein
STRINGOB07G11910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-73NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]