PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G10700.1
Common NameLOC102713651
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 259aa    MW: 27857.2 Da    PI: 8.233
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G10700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.4e-33107164259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  OB07G10700.1 107 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 164
                   8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-3491165IPR003657WRKY domain
SuperFamilySSF1182901.57E-2898164IPR003657WRKY domain
PROSITE profilePS5081129.735101166IPR003657WRKY domain
SMARTSM007748.6E-39106165IPR003657WRKY domain
PfamPF031063.2E-26107164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAMAGDWPFS ANEAYADSSA IFAELDWANG LAVGELLPPL DPPESETPAG SAASSCSTDD  60
ADGGGKPAAA STEAASKPAP EKKGGKKRRV RQPRFAFMTK SEIDHLEDGY RWRKYGQKAV  120
KNSPFPRSYY RCTNSKCTVK KRVERSSDDP SVVITTYEGQ HCHHTVTFPR AASHIHTMAA  180
ALQMPPFVSA HHQLYSNLPP ASLPSLLQPL HCNQELQAVA SSGYHKPSVT AASSSSPARS  240
VPVDEGLLGD MVPRAMRHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2696163774Probable WRKY transcription factor 4
2lex_A3e-2696163774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G10700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409581e-112AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence.
GenBankAY3418581e-112AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658215.10.0PREDICTED: probable WRKY transcription factor 57
SwissprotQ9C9832e-61WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLJ3MI380.0J3MI38_ORYBR; Uncharacterized protein
STRINGOB07G10700.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-54WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]