PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G10200.1
Common NameLOC102712371
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 312aa    MW: 33570.3 Da    PI: 7.3604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G10200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176284123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C+ C + F++   L  H+++H
  OB07G10200.1 62 YTCSFCRREFRSAQALGGHMNVH 84
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-65989No hitNo description
SMARTSM003550.00616284IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-56285IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2196289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDAAAMDRMA KHYWAMWGAT ASGAAVRSAW PPAHGEPSWE EQAFAQDAAG HLGGCVWPPR  60
SYTCSFCRRE FRSAQALGGH MNVHRRDRAR LRQCASSPEP ADREDDLQVQ LQQPVVSLCA  120
PPPPVSADHQ LPAVGNHSPL LRLSSPNSTA GDSVHHQDQQ QLRAAIATTY NSSSASSPNS  180
CIATIIKESR NKARLFTTMP PPPAAAAAAA TTFGLGLGGD YVKEKEDDEN SLEERKRKRR  240
RVDEALTPTA AEGEGRRREA DHPDQDANKV ITSSPAPASS SSASAALLVH HRLAIVGRQE  300
VDLELRLGTS PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135784229superman protein
2l1o_A2e-135784229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239RKRKRR
2234240RKRKRRR
3235240KRKRRR
4236240RKRRR
5237241KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G10200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126153e-80CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361113e-80CT836111.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103M23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657385.10.0PREDICTED: uncharacterized protein LOC102712371
TrEMBLJ3MHY90.0J3MHY9_ORYBR; Uncharacterized protein
STRINGOB07G10200.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-26zinc-finger protein 10