 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OB06G35590.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 461aa MW: 50328.7 Da PI: 5.5004 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB06G35590.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 24.6 | 4.6e-08 | 259 | 283 | 7 | 30 |
HHHHHHHHHHHHHHHHHHCTSCC.C CS
HLH 7 erErrRRdriNsafeeLrellPk.a 30
++ErrRR+r+N++++ Lr+++Pk +
OB06G35590.1 259 MAERRRRKRLNDRLSMLRSVVPKiS 283
79********************955 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAMDGGY PERHQATVSV LPTFTASYEQ 60
PQPPPPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXPSP ASSEQPQPPP PPAGFDCLAE 180
VYGTAAAFGP NAGAGEYGGD LGFLDVVEPK ASMVVDGGLG VCKLEPGLAE GGGGGGFGAV 240
AAPPSKKKRV EGMPSKNLMA ERRRRKRLND RLSMLRSVVP KISKVANLLL LFFSFSSPEI 300
ASECEEEQVD GQDVDSWRHD RLHEGVAGED PAAAGGDRGA AAGDAGRAQR LQGAQPQRDA 360
GQEHTKVRGG AEGGRRHPGG DLLRGEARAA AVDGEHAGDA GPRHPPLRRQ LLQRLRHARL 420
LLRDAEGEDE RGHDKAGAVQ ERRLWRRMLV EEDSPAAAAI K
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 246 | 266 | KKRVEGMPSKNLMAERRRRKR |
| 2 | 260 | 267 | ERRRRKRL |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063523 | 0.0 | AK063523.1 Oryza sativa Japonica Group cDNA clone:001-116-H12, full insert sequence. |
