PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G32920.1
Common NameLOC102717533
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 695aa    MW: 75764.3 Da    PI: 8.2519
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G32920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.4e-24128229199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  +++++
  OB06G32920.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RTENG 220
                   89****************************996555555..8999*********************************************..45889 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                    l+v+++r+
  OB06G32920.1 221 DLCVGIRRA 229
                   99****997 PP
2Auxin_resp112.93.1e-37287370183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   aa+ a ++++FevvY+Prast+eF+vk+  v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  OB06G32920.1 287 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 370
                   688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-37119231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-28124230IPR015300DNA-binding pseudobarrel domain
CDDcd100179.32E-21127228No hitNo description
PROSITE profilePS5086312.999128230IPR003340B3 DNA binding domain
PfamPF023622.4E-22128229IPR003340B3 DNA binding domain
SMARTSM010193.4E-21128230IPR003340B3 DNA binding domain
PfamPF065073.1E-32287370IPR010525Auxin response factor
PROSITE profilePS5174524.028609689IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MITFVDSAAK ERERENDKCL DPQLWHACAG GMVQMPPVNS KVYYFPQGHA EHAQGQGPVE  60
FPAGRVPALV LCRVAGVRFM ADPDTDEVFT KIRLVPVRAN EQGYPADADD GIGAAAAAAA  120
QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF  180
RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPELL  240
PPPLPPAGGN YGGFSMFLRG DDDSNKMAGA ARGKVKARVR PEEVVDAANL AVSGQPFEVV  300
YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR  360
WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV EVVSNMPAIH LAPFSPPRKK LCVPLYPELP  420
IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLSDLHL NKLQSSLSPH  480
RLHQLDHGMQ PRIAAGLIIG HPTARDDISC LLTIGSPQNN KKSDCKKAPA QLMLFGKPIL  540
TEQQISLGDA APMSVRKSSS DGNAEKTVKK SNSDVSSPRS NQNGTTDNLS CGGVPLCQDN  600
KVLDVGLETG HCKVFMQSED VGRTLDLSVV GSYEELYRRL ADMFGIEKAE LMSHVFYRDA  660
AGALKHTGDE PFSEFTKTAR RLNILTDTSS NNLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-802039251389Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G32920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1003220.0AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656399.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLJ3MGZ80.0J3MGZ8_ORYBR; Auxin response factor
STRINGOB06G32920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]