PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB06G32770.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 448aa MW: 50750.4 Da PI: 9.9473

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB06G32770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.7e-07	88	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C + ++C+FaHg OB06G32770.1 88 YKTKLCALWRR-GDCTR-ASCSFAHG 111 9********.*.*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	3.9E-11	82	118	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0075	87	112	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.051	87	113	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.0E-5	88	111	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MVGLCWAAHE EADHTYSWMA CPIVGLISSS PRRRPPFRRP VLVVLLSSPP TLAAVSSRRR 60 RSRRRGETER RGGVMREMMG PPRRGSAYKT KLCALWRRGD CTRASCSFAH GDAELRGPPP 120 HSSFPPRTGP GRRDHRPDDF RGRHLRRYSP HRRNSPERDA RGHFFRDQRP HSRDRGSSHS 180 RSPIRKRHRK KIDSGKTDSS ESLNTSDNDD RKKDDISNNA DDKHDNEAQL QHIQLDMEAL 240 REEKSTLEMM LNGKINEASA LSSRIADLES QLSEEKDACQ RMASKTKKLI KAHARYVKAQ 300 DDLKRSQARF ERLADLLASD TLKPCSKDQG SSAAKEDTYN AYDMSPSDQR QNHEAARKRS 360 IALSTSEEGR SAKKKRESYD NSIPMSGKYR PEDALEPFQS SKGTETEEVL PVKRNLGEGD 420 NNEEVNIVSS GNVFTDRYEG GDDDVLVC

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MVGLCWAAHE EADHTYSWMA CPIVGLISSS PRRRPPFRRP VLVVLLSSPP TLAAVSSRRR  60
RSRRRGETER RGGVMREMMG PPRRGSAYKT KLCALWRRGD CTRASCSFAH GDAELRGPPP  120
HSSFPPRTGP GRRDHRPDDF RGRHLRRYSP HRRNSPERDA RGHFFRDQRP HSRDRGSSHS  180
RSPIRKRHRK KIDSGKTDSS ESLNTSDNDD RKKDDISNNA DDKHDNEAQL QHIQLDMEAL  240
REEKSTLEMM LNGKINEASA LSSRIADLES QLSEEKDACQ RMASKTKKLI KAHARYVKAQ  300
DDLKRSQARF ERLADLLASD TLKPCSKDQG SSAAKEDTYN AYDMSPSDQR QNHEAARKRS  360
IALSTSEEGR SAKKKRESYD NSIPMSGKYR PEDALEPFQS SKGTETEEVL PVKRNLGEGD  420
NNEEVNIVSS GNVFTDRYEG GDDDVLVC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	375	RKRSIALSTSEEGRSAKKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB06G32770.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064816	0.0	AK064816.1 Oryza sativa Japonica Group cDNA clone:J013000E13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656389.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X1
Swissprot	Q6H7U2	1e-108	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	J3MGY3	0.0	J3MGY3_ORYBR; Uncharacterized protein
STRING	OB06G32770.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	6e-33	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]