PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G32770.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 448aa    MW: 50750.4 Da    PI: 9.9473
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G32770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-0788111126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   ykt+lC  ++r G C + ++C+FaHg
  OB06G32770.1  88 YKTKLCALWRR-GDCTR-ASCSFAHG 111
                   9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-1182118IPR000571Zinc finger, CCCH-type
SMARTSM003560.007587112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.05187113IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-588111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVGLCWAAHE EADHTYSWMA CPIVGLISSS PRRRPPFRRP VLVVLLSSPP TLAAVSSRRR  60
RSRRRGETER RGGVMREMMG PPRRGSAYKT KLCALWRRGD CTRASCSFAH GDAELRGPPP  120
HSSFPPRTGP GRRDHRPDDF RGRHLRRYSP HRRNSPERDA RGHFFRDQRP HSRDRGSSHS  180
RSPIRKRHRK KIDSGKTDSS ESLNTSDNDD RKKDDISNNA DDKHDNEAQL QHIQLDMEAL  240
REEKSTLEMM LNGKINEASA LSSRIADLES QLSEEKDACQ RMASKTKKLI KAHARYVKAQ  300
DDLKRSQARF ERLADLLASD TLKPCSKDQG SSAAKEDTYN AYDMSPSDQR QNHEAARKRS  360
IALSTSEEGR SAKKKRESYD NSIPMSGKYR PEDALEPFQS SKGTETEEVL PVKRNLGEGD  420
NNEEVNIVSS GNVFTDRYEG GDDDVLVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356375RKRSIALSTSEEGRSAKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G32770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0648160.0AK064816.1 Oryza sativa Japonica Group cDNA clone:J013000E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656389.10.0PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X1
SwissprotQ6H7U21e-108C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLJ3MGY30.0J3MGY3_ORYBR; Uncharacterized protein
STRINGOB06G32770.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.16e-33C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]