PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G28840.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 544aa    MW: 60571.1 Da    PI: 5.9865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G28840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.6e-09376423455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  OB06G28840.1 376 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 423
                   8*************************94....22445556666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000671.1E-553298IPR001128Cytochrome P450
SuperFamilySSF482643.8E-723298IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.102.9E-773298IPR001128Cytochrome P450
PRINTSPR004632.7E-255371IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.7E-25174191IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.4E-5185202IPR001128Cytochrome P450
PRINTSPR004632.7E-25194220IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.7E-25237255IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.4E-5238249IPR001128Cytochrome P450
PRINTSPR004632.7E-25277301IPR002401Cytochrome P450, E-class, group I
SuperFamilySSF474596.15E-15370441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.75E-9370427No hitNo description
Gene3DG3DSA:4.10.280.103.6E-14372440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6376423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8378428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0004497Molecular Functionmonooxygenase activity
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MKRACVHELL AGQTLDRLRH VRREEVARLL GSLRRTSADE GAHVDVDAAL MGLTGDIVSR  60
MVMSRRWTGD DTDIQEMRRL VAEIAELSGT FSLQDYIGAF RYWDVQGLGK RIDAVNRKVD  120
AMMERILTAR EAVRRLRRQQ KAAADGEEEE KDVLDMLFDM HEDEAAEMRL TRGNIKAFML  180
EMFEAGTDTA AITLDWALSE LINNPDVLRK LQAELDAVVG NGRLADELDI PNLPYLQAVA  240
RETMRLHPAA PMVTRRSREP CTVDGYDVPA GATVFVNVWA IGRDPACWPE PLEFRPERLD  300
GWLVILAIFA CVPYKTLLLG VKGAVRELFL LMMGKAAKKG KTAASGDDSK DGGGDGEDEK  360
PAYVHVRARR GQATDSHSLA ERARREKINA RMELLKELVP GCSKVSGTAL VLDEIINHVQ  420
SLQRQVEYLS MRLAAVNPRV DFGGIDNFLT TECGRITGLN YKNGMDLEQV TWPDMGVHGT  480
RHLMQLQQQF WHGDLAHPLQ PPSQWEKRAD TNPPGFSNSS SSLFGYDLAS SGAPAQTGKL  540
KTEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A4e-501299123413Ferruginol synthase
5ym3_A4e-501299123413Ferruginol synthase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G28840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709700.0AK070970.1 Oryza sativa Japonica Group cDNA clone:J023066J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693635.10.0PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like
TrEMBLJ3MFU00.0J3MFU0_ORYBR; Uncharacterized protein
STRINGOB06G28840.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.26e-48bHLH family protein