PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G28600.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 460aa    MW: 51992.3 Da    PI: 7.9619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G28600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS52.59.2e-17395459311374
          GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+W  + + aGF + pls +a++qa+lllr ++ s+gy v+e +g+ +lgW+ rpL+svSaW+
  OB06G28600.1 395 GIERWGGAARCAGFAARPLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQMRPLLSVSAWQ 459
                   5689************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.2E-14395459IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MRWLESWEAA TASPDVGRAR SSPSLLNPPS SDARSPPPPL HAPSPPPTPS SSTTPAAWVI  60
ISCRGGGADG GDGMLGSLHS SSSSDTDNNN SGCKNNGGGE AXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXE SEAAVGPSGG RWWRGIERWG GAARCAGFAA RPLSAFAVSQ  420
ARLLLRLHYP SEGYLVQEAR GACFLGWQMR PLLSVSAWQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G28600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0326391e-157FJ032639.1 Oryza brachyantha clone a0054N20 U5 small nuclear ribonucleoprotein component, charged multivesicular body protein 4b, putative SFT2 protein, fructose-bisphosphate aldolase cytoplasmic isozyme, copine-1, subtilisin-like protease precursor, ZAC, MYB-CC type transfactor, Monoculm1, Mlo family protein, aspartic proteinase nepenthesin-1 precursor, microtubule-associated protein MAP65-1a, IQ calmodulin-binding motif family protein, EMB2261 putative, polygalacturonase precursor, and exopolygalacturonase precursor, genes, complete cds; putative RNA polymerase A(I) large subunit gene, partial cds; and unknown genes.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.15e-15GRAS family protein