PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G18550.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 318aa    MW: 35838 Da    PI: 9.4674
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G18550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.23.9e-2590170171
       E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                   rkeksL+lltq+f+kl+ + e +++tl+e ak+L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  OB06G18550.1  90 RKEKSLGLLTQNFVKLFLTMEIETITLDESAKRLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKtqqldSRKPAFRWLG 170
                   79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-2387172IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-3090170IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-2091170IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.49E-1392171IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLVRRAKNRY TWIGFGGVPA ALAELKERAL RGVSSAASLS LDETSAANVS DDEEDDKLDD  60
ADGDADSEKL SQSIDTHSDK PPCKIRSDHR KEKSLGLLTQ NFVKLFLTME IETITLDESA  120
KRLLGEGHAE SNMRTKVRRL YDIANVLSSL NLIEKTQQLD SRKPAFRWLG RPKRNEGTGV  180
TVALPPTKIM LPNKRAFGTD LTNIDNKRGK LESTTENKGK LAQDGGNIFK NFQTQVTQPG  240
QGNRSDFVYG PFHPAGARKQ EHDNRNVQER ERKSIQDWEN LASSFRPQYQ NQALNDLFGH  300
YVEAWKSWYS DLTRSRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A5e-17116260228Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G18550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655962.20.0PREDICTED: E2F transcription factor-like E2FE, partial
TrEMBLJ3MCW10.0J3MCW1_ORYBR; Uncharacterized protein
STRINGOB06G18550.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.26e-65DP-E2F-like 1