PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G17380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 341aa    MW: 36625.1 Da    PI: 6.7869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G17380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.2e-09172200335
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+
  OB06G17380.1 172 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGT 200
                   9******9.**********965...5*****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.8E-4171207IPR001471AP2/ERF domain
PROSITE profilePS5103212.998171200IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-8171200IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-14171200IPR001471AP2/ERF domain
PfamPF008471.9E-4172200IPR001471AP2/ERF domain
CDDcd000188.70E-14172200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAAIDLYKYQ LSSSSSSSSD QELMKALEPF IRSASPTSTS TSAPFSYTSA STFTSTPFSY  60
SPLPQESYYL PASSSYAAIP PPTIATTTSF SELPPLPPSS SSYTSPAAYP QANTASGLAQ  120
LGPEQIQQIQ VQFLMQQQQQ RGMLASAAAY LGPRAQPMKQ AGAAASAAGK MYRGVRQRHW  180
GKWVAEIRLP KNRTRLWLGT XXXXXXXXXX XXXXXXXXXX XXXXXXXXAG PLHSSIDAKL  240
TAICQTLAAA PPASKKSTAA AARPDSPKGS ASTTTTTSEG DESAISACSP PLPPLPPSQP  300
APPPPPEMTN LDFTEAPWDE SDAFHLYKFP SWEIDWDSIL S
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G17380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047271e-143AP004727.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0516A04.
GenBankAP0149621e-143AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656792.11e-145PREDICTED: ethylene-responsive transcription factor RAP2-4-like
TrEMBLJ3MCJ40.0J3MCJ4_ORYBR; Uncharacterized protein
STRINGOB06G17380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-23ERF family protein