PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G16410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 205aa    MW: 21309.8 Da    PI: 4.36
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G16410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.6e-101562355
           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr ++ +g+Wv+eIr p     + +r  lg    ae Aa+a++aa ++l+g
  OB06G16410.1 15 YKGVRMRS-WGSWVSEIRAP-----NkARRGLGPPPPAEAAARAYDAALLCLKG 62
                  9****998.**********9.....44999*********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-181478IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-191472IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-111473IPR016177DNA-binding domain
PROSITE profilePS5103218.1621472IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVKTAARHGG GKRAYKGVRM RSWGSWVSEI RAPNKARRGL GPPPPAEAAA RAYDAALLCL  60
KGSAAADDLN FPVRLPFDLP AAAMSPKSIQ RVAAAAANAG SSSAADGFSG VNDSGSASAS  120
EASTPACSSS DASPLSSPET VISDDVDYSL LADIEAFFQS PKCMEYAMMD PCSAFFTPAA  180
PLATEEECCW EEEGDIALWS FSSLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G16410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046871e-158AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149621e-158AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-158CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693493.16e-97PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF013-like
TrEMBLJ3MC971e-144J3MC97_ORYBR; Uncharacterized protein
STRINGOB06G16410.11e-144(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.13e-13ERF family protein