PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G15580.1
Common NameLOC102704984
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 477aa    MW: 51357.4 Da    PI: 5.4053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G15580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-11327372555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h+++Er RR++i +++ +L++l+P++      K +K+++L + ++Y+k Lq
  OB06G15580.1 327 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 372
                   99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-16320382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-12320376No hitNo description
PROSITE profilePS5088816.901322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16324381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8327372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDYSNGYMWS DNSASENYSF VDGSAEPYAE EGSLQPSGYF MGTGSDRSLK ITEHERIPTM  60
LANGCLPYNT QAHALSSHVL SKDELPNNLL ELRQLQNNSN LQGNSIPPRV LQCNSTPGLF  120
DAKLDTPGLA ELPHALSSSI DSNGSEISTF LADVHTVSSA PTLCSTFQNV SSFMEPVNLE  180
AFGFQGTHNT AMLNKTSHPN GSPSLFDNAA MTSLHDSKEF INGGSISSFG TVLQALGAGG  240
LKAQQQEQNV RNIPLPTFTS GSRLAVTDAQ GPPLPSSKIP PLIHDHKSEY PINHSSDVEP  300
QSNSAPGNSA SVKPRTRARR GQATDPHSIA ERLRREKISE RMKNLQDLVP NSNKADKSSM  360
LDEIIDYVKF LQLQVKVLSM SRLGAPGAVL PLLRESQTEC HNNPSLSAST ISQGLPEMTD  420
SEDSSAFEQE VVKLMETSIT SAMQYLQNKG LCLMPIALAS AISNQKGMAA AAIPPEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G15580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655874.10.0PREDICTED: transcription factor SPATULA-like isoform X1
RefseqXP_006655875.10.0PREDICTED: transcription factor SPATULA-like isoform X1
TrEMBLJ3MC140.0J3MC14_ORYBR; Uncharacterized protein
STRINGOB06G15580.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-56LJRHL1-like 3