PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G14490.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 288aa    MW: 30812 Da    PI: 5.2715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G14490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-09145188447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT +E+ l++++ + +  g+W+ I++++ ++R++ q+ s+ + y
     OB06G14490.1 145 WTIDEHRLFLRGLRVYRCGDWDNISNHFVTTRSPVQVASHARRY 188
                      ****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.14E-10139193IPR009057Homeodomain-like
PROSITE profilePS512949.88140193IPR017930Myb domain
SMARTSM007173.9E-5141191IPR001005SANT/Myb domain
PfamPF002491.0E-7145188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-6145189IPR009057Homeodomain-like
CDDcd001675.11E-7145188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDARVGTQWT EAEVREARTI VSMMTGAAYY EAGSSNGNGN NDSSTRHDRI VSELQSWFPW  60
RTVCQPADQP QDNDGAGAVV NATPPEDQAA MNVVDLGMNN GGAGVVVGGG PMEEMVVQAP  120
PPAPAPVHVV NQGPGRQYAA PNTIWTIDEH RLFLRGLRVY RCGDWDNISN HFVTTRSPVQ  180
VASHARRYSR RLRMAPSEQR GGVRDHVDLF DVGEPAIMHN GSSGAAMNGA GNDAAPVWAP  240
LLHSPQIQQQ MMQLQAQAQA QQRWDAPQTA TAGDGDGWCS CSSGGGSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G14490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656692.11e-165PREDICTED: uncharacterized protein LOC102713918
TrEMBLJ3MBQ50.0J3MBQ5_ORYBR; Uncharacterized protein
STRINGOB06G14490.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.18e-15Homeodomain-like transcriptional regulator