PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB06G12380.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 266aa MW: 27500.9 Da PI: 9.488

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB06G12380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.4	1.2e-08	99	152	2	55
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ +++k+q +Lee+F+ +++++ +++ LA++l+L rq qNrR + OB06G12380.1 99 RKKLRLSKDQAAVLEECFKAHHTLTPKQKLALANSLSLRPRQGEGGVQNRRGRT 152 788899**********************************99777777777665 PP
2	HD-ZIP_I/II	99.3	3.6e-32	99	189	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEe+F+++++L+p++K +la++L l+prq + qnrR Rtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk OB06G12380.1 99 RKKLRLSKDQAAVLEECFKAHHTLTPKQKLALANSLSLRPRQGEGGVQNRRGRTKLKQTEVDCEQLKRWCDQLADHNRRLHKELAELR-ALK 189 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-9	73	156	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.1E-8	86	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.333	95	155	IPR001356	Homeobox domain
SMART	SM00389	5.8E-4	97	159	IPR001356	Homeobox domain
Pfam	PF00046	5.3E-6	99	152	IPR001356	Homeobox domain
CDD	cd00086	4.58E-6	99	156	No hit	No description
SMART	SM00340	3.2E-19	155	198	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	9.6E-11	155	189	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MERQSLDLGL SLGLGLGVTS TAAPRLPPPA PPPRPLSSGV AIASEQEGSH GAVAAEDERV 60 APCSPGSPVS SGSGKRTADR SAGSGDEDDA GCDGGGGARK KLRLSKDQAA VLEECFKAHH 120 TLTPKQKLAL ANSLSLRPRQ GEGGVQNRRG RTKLKQTEVD CEQLKRWCDQ LADHNRRLHK 180 ELAELRALKA TPPAAAETPL TTLTMCLSCK RVATSSSASA ANAGAPSPFP GHHPQFFCGF 240 RDSAAGATAA AYGSSSGLAK PVRAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	155	RRGRTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB06G12380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT830896	1e-165	CT830896.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014L20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015693446.1	1e-126	PREDICTED: homeobox-leucine zipper protein HOX28-like, partial
Swissprot	A2Y931	4e-76	HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
Swissprot	Q5VPE5	4e-76	HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBL	J3MB44	0.0	J3MB44_ORYBR; Uncharacterized protein
STRING	OB06G12380.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3842	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-36	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]