PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G11610.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 480aa    MW: 51574.4 Da    PI: 6.3299
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G11610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1541.3e-472053451138
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 
                   lv++L++cA+ ++++++e+a+ +Larl e+asp+g +pm+R+aayfteALa r++++++ ++++ pp++ +++    ++ ++al++++ v+Pi++f 
  OB06G11610.1 205 LVRALIACADSITTRNHEAANYYLARLGEMASPAGpTPMHRVAAYFTEALALRVVHQWPLMFDISPPRDLTDDAfgGDDDAMALRVLNAVTPIPRFL 301
                   6899******************************************************************9988999******************** PP

          GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg 138
                   h+t N+ +l+a+eg+ervH+iDfdi+qGlQWp Llq+La+R++ 
  OB06G11610.1 302 HFTLNERLLRAFEGHERVHVIDFDIKQGLQWPGLLQSLATRASR 345
                   *****************************************865 PP
2GRAS71.21.9e-22357453282374
          GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaG.Fkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                   r    re+++rei+n+va eg+er+erhe+++ Wr+ +e+ G Fk++ +++++a+q +++ r+++  d y+v+ +   + l+l W+d+pL++v+aW+
  OB06G11610.1 357 RGRRCREMFAREIRNAVAFEGTERFERHESFAGWRRLMEDGGvFKNAGIGDREAMQGRMIARMFGgPDKYSVQAQgdGEGLTLRWMDQPLYTVTAWT 453
                   44445678********************************9999*********************9899***9654367788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.928179480IPR005202Transcription factor GRAS
PfamPF035144.6E-45205345IPR005202Transcription factor GRAS
PfamPF035146.8E-20357453IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLAGCSFSSR HQMSTAQRFD ILPCGFSKRG NRGDGAAPRV AGDARSGTTC SFRTHPAPPV  60
TQAGSWGAQA RAVKRSHDDD AVEEYGPIVR AKRTRMGGDG DEVWFHQSIA GTMQATAAGE  120
GEEAEEEKVF LVPSAAAFPH GMAAAGPSLA AAKKEEYSKS PSDSSSSSSG TDGGSSAMLP  180
PPPPEFDARN GVPAPGQAEQ EALELVRALI ACADSITTRN HEAANYYLAR LGEMASPAGP  240
TPMHRVAAYF TEALALRVVH QWPLMFDISP PRDLTDDAFG GDDDAMALRV LNAVTPIPRF  300
LHFTLNERLL RAFEGHERVH VIDFDIKQGL QWPGLLQSLA TRASRRRTCG SPESASRGRR  360
CREMFAREIR NAVAFEGTER FERHESFAGW RRLMEDGGVF KNAGIGDREA MQGRMIARMF  420
GGPDKYSVQA QGDGEGLTLR WMDQPLYTVT AWTPAGDGDG DGAGGSTVSA STTASHSQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2121234226153Protein SCARECROW
5b3h_A1e-2121234225152Protein SCARECROW
5b3h_D1e-2121234225152Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G11610.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064490.0AK106449.1 Oryza sativa Japonica Group cDNA clone:002-103-E10, full insert sequence.
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881992.11e-180protein DWARF AND LOW-TILLERING-like
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLJ3MAW70.0J3MAW7_ORYBR; Uncharacterized protein
STRINGOB06G11610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.13e-48GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]