PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G34240.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 386aa    MW: 41668.7 Da    PI: 6.5137
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G34240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS222.12.7e-68312632237
          GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                   v+lL++cA a+++gd ++a   L+  +e+    p+++ + R+ ++f+ ALa+rl+       +++pp   +    +ee   ++ f+e+ P+lkf+h+
  OB05G34240.1  31 VNLLVTCAGAIQAGDYAAAAGSLSDAREIfvKMPTRTGIGRVLTHFADALAERLFP---AFPQSVPPPLPP---RAEERELFRGFYEAGPFLKFAHF 121
                   689**************************9889999*******************9...444455555555...5677778999************* PP

          GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   taNqaIlea+eg++ vH+iDfd+++G+QWp+L+qaL  Rp+gpp lRiTg+g+++ g+++el+ +g rLa++A++ +vpf f+ ++a++l+ l++++
  OB05G34240.1 122 TANQAILEAFEGCNSVHVIDFDLKEGVQWPSLIQALVVRPGGPPFLRITGIGPHAGGNRDELRDVGIRLAELAKSYNVPFAFRGIAADQLDGLRPWM 218
                   *****************************************************8888**************************************** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrll.desvsleserdevLklvkslsPk 237
                   ++v pgEa+aVn+vlqlhrll d++++++ ++++vL+ v s++Pk
  OB05G34240.1 219 FQVAPGEAVAVNSVLQLHRLLvDQDAATAAPIEAVLDWVASMNPK 263
                   *******************972555666669*************8 PP
2GRAS70.53.3e-22265346293374
          GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ei ++v+ eg++r+erhe + +W erl++aG+ ++pl+ +   qa + +r + + g+ v+e+ g l+l+W++++L+s+SaWr
  OB05G34240.1 265 EIADIVSREGSSRVERHEPMPRWTERLQRAGLAQLPLGATGLWQAAMQVRDFCGAGFGVQENGGFLTLTWHNQKLYSASAWR 346
                   8********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.2174386IPR005202Transcription factor GRAS
PfamPF035149.3E-6631263IPR005202Transcription factor GRAS
PfamPF035141.1E-19265346IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPTLLLLLLP LPYRGGEAGG WGLEKMAVRS VNLLVTCAGA IQAGDYAAAA GSLSDAREIF  60
VKMPTRTGIG RVLTHFADAL AERLFPAFPQ SVPPPLPPRA EERELFRGFY EAGPFLKFAH  120
FTANQAILEA FEGCNSVHVI DFDLKEGVQW PSLIQALVVR PGGPPFLRIT GIGPHAGGNR  180
DELRDVGIRL AELAKSYNVP FAFRGIAADQ LDGLRPWMFQ VAPGEAVAVN SVLQLHRLLV  240
DQDAATAAPI EAVLDWVASM NPKGEIADIV SREGSSRVER HEPMPRWTER LQRAGLAQLP  300
LGATGLWQAA MQVRDFCGAG FGVQENGGFL TLTWHNQKLY SASAWRAAAC NKKMIAGAAA  360
MEESQHSDQN AGEGSSGHGV FSQMMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-353734525377Protein SCARECROW
5b3h_D8e-353734525377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G34240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.10.0DELLA protein SLR1
TrEMBLJ3MA000.0J3MA00_ORYBR; Uncharacterized protein
STRINGOB05G34240.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-64GRAS family protein