PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G31840.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 386aa    MW: 43017.6 Da    PI: 5.1651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G31840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000562883241354
                   HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R+r+ +++  L++l+P        K++ a++L +A  Y+k L
  OB05G31840.1 288 RERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 324
                   8899999*********95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.969275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-6286330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-10288347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.24E-8288329No hitNo description
Gene3DG3DSA:4.10.280.101.6E-7288332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MYMDAFGWSG AQSPAAAPCQ PSCPGDVVDD VLLAAVLGAS FELHAVVDGG AAAVGSDDAY  60
GFDDVLPCQQ MSLLRCQDGL GSLPGGASPT TATFLDSVGX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXRER VSERLRVLQR  300
LVPGGSKMDT ATMLDEAASY LKFLKSQLEA LETLGNGGHR NNPLHHHYYT GSRNASSAGS  360
SNSTVLAFGR DGISAGYVKS NRNLQL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G31840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1047135e-79AC104713.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1362_G11, complete sequence.
GenBankAP0149615e-79AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126135e-79CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655542.13e-61PREDICTED: transcription factor bHLH82-like
SwissprotA0A0P0WQ901e-38LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLJ3M9B05e-59J3M9B0_ORYBR; Uncharacterized protein
STRINGOB05G31840.19e-60(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-09bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]