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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OB05G31800.1 |
| Common Name | LOC102702939 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MYB_related |
| Protein Properties |
Length: 442aa MW: 49590.4 Da PI: 10.057 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB05G31800.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 21.6 | 5.2e-07 | 132 | 174 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+W+ eE ++l ++++++ + + Ia ++++ R+ +++ksr+++
OB05G31800.1 132 AWSREETDQLFELCERFDLR-FIVIADRFPTDRSMEDLKSRYYS 174
7*******************.*********************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 442 aa
Download sequence Send
to blast |
MDAKDILGLP KTAFPSVQEK KTRTPKEPQR KPDGVSREVY ALTGGVGMAP LMPTVEASHL 60
KRRPAVEKEK VTWQWLPFTS SARSDSLQLY HWVRVVNGAP PTGDYHFAKY NKKADVLKYN 120
DEEYEKYLID PAWSREETDQ LFELCERFDL RFIVIADRFP TDRSMEDLKS RYYSVTRALL 180
IARARSFDEV AGNPLVKETF NAAHETERKR ALSALLSQTK QQERKDAEIL AEAKRIMESR 240
AASKHTEEVG TLASFDNATV SADGVSPLSN AHPSSTATLQ AAPVNSSIPA SLRMLRVYLR 300
TQALDQMVQA ASASAGLRVI KRVDQTLQDL GVNLKPKVPT KAVCVEHLEL RNEILTLLNL 360
QKQLQNKEAE VSANRENSFT EAPSTPKRAN RDVDRPFVPD TVGFVGERAG KRDHKRKTAG 420
RFMDAPPSPP QSKRPRKLKA SD
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3hm5_A | 3e-19 | 104 | 184 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
| 4iej_A | 3e-19 | 104 | 184 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK071090 | 0.0 | AK071090.1 Oryza sativa Japonica Group cDNA clone:J023079C11, full insert sequence. |
