 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB05G29380.1 |
| Common Name | LOC102718175 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 431aa MW: 46117.4 Da PI: 6.5093 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB05G29380.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 262 | 2.1e-80 | 39 | 428 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn....sseelaalkl..fsevsPil 91
++lLl+cA a++s+d +laq++++ l+++as++gdp+qRl++ +++AL ar r + +++++ e+ +++++++l +++++P++
OB05G29380.1 39 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPNQRLTSWLLRALVARAWRrLCAPAGASVACLESGAPApprgRGRAMSVTELadYVDLTPWH 135
589************************************************99966666777777766654445554555555566689******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.... 181
+f++ + N aIl+av+g +vH++D+++++++QWp+L++ L++Rp+g+p lRiT+ + ++ + + ee+g rLa+fA++ gv++efnv+
OB05G29380.1 136 RFGFTASNAAILRAVAGRAAVHVVDLSVTHCMQWPTLIDILSKRPGGAPALRITVPSVRPAVpplLAVSSEELGLRLANFATSRGVQLEFNVVesaa 232
******************************************************9887555578899999**********************98877 PP
GRAS 182 .............vakrledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
+++ l ++ +L ++ gEal+Vn++ l ++ ++ rd +L++v++l+P +v+v++++ad++s+s++ r++ +
OB05G29380.1 233 taatspkkkkqptPCQE---LasvlsDPPSLGLRDGEALIVNCQSWLRHVA------PDSRDFFLDTVRTLNPCLVTVTDEDADLDSPSLASRMAGC 320
77776666554442222...133366888899999************9998......566899********************************** PP
GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
+++++ l+d+l++++pr+s r E++ +gr+i++v++ g e r e+ ++ er+++ F +v ++e+aa+++++ll +++ g+ v+ e++
OB05G29380.1 321 FNFHWILLDALDMSAPRDSPRRLEQEAA-IGRKIESVISEDGGE---RSESGARLAERMRQREFASVGFDEEAAAEVRRLLGEHA-TGWGVKREDDM 412
************************9999.**************9...6777778889****************************.99********* PP
GRAS 358 lvlgWkdrpLvsvSaW 373
lvl+Wk++ v++SaW
OB05G29380.1 413 LVLTWKGHGAVFTSAW 428
**************** PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MDMEPAVRGS GGVGAAHGHG SSASACFSGG VLVDGPRTQQ LLLHCAAALE SNDVTLAQQA 60
MWVLNNIASS QGDPNQRLTS WLLRALVARA WRRLCAPAGA SVACLESGAP APPRGRGRAM 120
SVTELADYVD LTPWHRFGFT ASNAAILRAV AGRAAVHVVD LSVTHCMQWP TLIDILSKRP 180
GGAPALRITV PSVRPAVPPL LAVSSEELGL RLANFATSRG VQLEFNVVES AATAATSPKK 240
KKQPTPCQEL ASVLSDPPSL GLRDGEALIV NCQSWLRHVA PDSRDFFLDT VRTLNPCLVT 300
VTDEDADLDS PSLASRMAGC FNFHWILLDA LDMSAPRDSP RRLEQEAAIG RKIESVISED 360
GGERSESGAR LAERMRQREF ASVGFDEEAA AEVRRLLGEH ATGWGVKRED DMLVLTWKGH 420
GAVFTSAWVP S
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC113332 | 0.0 | AC113332.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1057_B02, complete sequence. |
| GenBank | AC130597 | 0.0 | AC130597.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017K09, complete sequence. |
| GenBank | AK070489 | 0.0 | AK070489.1 Oryza sativa Japonica Group cDNA clone:J023050L12, full insert sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
