 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB05G28200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 334aa MW: 35926.1 Da PI: 6.4302 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB05G28200.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 164.5 | 8.8e-51 | 111 | 316 | 2 | 214 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
++lL+ecA a+s g+l+ a+ +L +ls++asp++ + +Rl+ayf++A+ arl++s+ ++++ l+ + + aa++++++v P+ ++++l+
OB05G28200.1 111 ISLLMECAAAMSVGNLADANGTLLELSQMASPYAaSCGERLVAYFVRAMTARLVGSWVGVAAPLAQPPC-----AAINAAFRALYNVAPFARLAYLA 202
789******************************96778*******************999976655555.....46778999*************** PP
GRAS 98 aNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
+Nq+Ilea++g++ vHi+D+d+ G lQW++Ll aLa+Rp+gpp +R+Tg+g s+ l+ tg++La +A++l ++fef +++ + ++ +
OB05G28200.1 203 CNQTILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVIRVTGFGM----SASVLHDTGNQLAGLARKLCMSFEFYAVAKRPGDADAVA 295
**********************988447**************************....9**************************877788888899 PP
GRAS 193 eLrvkp.gEalaVnlvlqlhrll 214
+ ++ gE++aV++ + ++
OB05G28200.1 296 DVPGRRpGEVVAVHWLRH--SMC 316
9966656*******9863..333 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MTGRGSNMQD SLGLMQFHDH QYLYSSSSSN LPLQQPLLYH HHQFVEAREG CTGEDDAPEF 60
VEPAAAAARA MELRACKEVY SEGGGAVEER TAMAGAEQVV EEEEAHGVRM ISLLMECAAA 120
MSVGNLADAN GTLLELSQMA SPYAASCGER LVAYFVRAMT ARLVGSWVGV AAPLAQPPCA 180
AINAAFRALY NVAPFARLAY LACNQTILEA FHGKRLVHIV DLDVVPGGAL QWLSLLPALA 240
ARPGGPPVIR VTGFGMSASV LHDTGNQLAG LARKLCMSFE FYAVAKRPGD ADAVADVPGR 300
RPGEVVAVHW LRHSMCNQYQ RRQQIESMVS TKRA
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC093952 | 0.0 | AC093952.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1004_E02, complete sequence. |
| GenBank | AC118289 | 0.0 | AC118289.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099O15, complete sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
