PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G28010.1
Common NameLOC102702286
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 277aa    MW: 31684.3 Da    PI: 9.2981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G28010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17136224197
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+k++++s+v++  +l lp +f++ h  + +++++++lede+g +++  +   +++ +  l++GW++F+  ++L++ D++vF+l++ ++f  ++ ++
  OB05G28010.1 136 FVKTMVRSHVSSCFWLGLPSRFCKLHL-P-PREFKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHHNLEDCDSLVFELVEPDRF--KIYIR 224
                   89*********************8774.4.4779****************..555444..***********************9987888..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-19129225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-23129225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-26134225No hitNo description
SMARTSM010195.2E-22136227IPR003340B3 DNA binding domain
PfamPF023622.6E-16136224IPR003340B3 DNA binding domain
PROSITE profilePS5086311.35136227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAAEAGSAAS GAAYEEERRK RVLENLKQLE DLGITKMSKS LLQAARLQKS TRASPKQRRK  60
FEATEVRRSS RARNSVSYKD DDFGELDSFL RRRRGSRNTE QGRDYTGRIA SYEQQQSAFK  120
RAERLQNRLD PENPSFVKTM VRSHVSSCFW LGLPSRFCKL HLPPREFKMV LEDEEGGEFD  180
SVYIGNRTGL SGGWRGFAMH HNLEDCDSLV FELVEPDRFK IYIRKAYDED ADESESVDLE  240
ADGDKKDASA KDATEQNDSP NAESLKGAKR RKLRARR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264270LKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G28010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687050.0AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654551.10.0PREDICTED: B3 domain-containing protein Os05g0481400-like
SwissprotQ5KQI41e-156Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLJ3M8770.0J3M877_ORYBR; Uncharacterized protein
STRINGOB05G28010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.16e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]