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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G27850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 298aa MW: 32038.5 Da PI: 4.3464 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78.8 | 6e-25 | 114 | 174 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dD + WrKYGqKe+k+s++pr YYrC+++ gCp++k++++s++dp+ ++itY geH+++ OB05G27850.1 114 MDDNFLWRKYGQKEIKNSKYPRFYYRCSYKddhGCPATKQIQQSETDPS-FDITYFGEHTCR 174 58***************************99999***********9997.79********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.865 | 109 | 171 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-24 | 110 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-23 | 111 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-35 | 114 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-24 | 115 | 174 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MAHTMALAAG ELNALPTQLV TEGRESAARL HDLLIGCVQA TAAGSTGSST LYDTVALAEQ 60 ILLCFDCALA KLHAVAAGAE EDDAAARSGG ERKTERRASN GGGNGGRVQR KATMDDNFLW 120 RKYGQKEIKN SKYPRFYYRC SYKDDHGCPA TKQIQQSETD PSFDITYFGE HTCRPGNDDA 180 AAAIVDSSEE LSAAQLVISF ANSSGDASVC WPCSGDDARI KSDSSQDSSL PCTVNVYDEP 240 IMESTPPVPG LPDLKPMDGF LLDGESLFDM DELIYFHELS AALGLLDRDD GAPVQSYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 8e-20 | 114 | 174 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G27850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144737 | 9e-62 | AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence. | |||
GenBank | AK288691 | 9e-62 | AK288691.1 Oryza sativa Japonica Group cDNA, clone: J090060J18, full insert sequence. | |||
GenBank | AP014961 | 9e-62 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 9e-62 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692635.1 | 0.0 | PREDICTED: probable WRKY transcription factor 62 | ||||
TrEMBL | J3M861 | 0.0 | J3M861_ORYBR; Uncharacterized protein | ||||
STRING | OB05G27850.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4663 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 2e-21 | WRKY DNA-binding protein 70 |