PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G25040.1
Common NameLOC102712361
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 453aa    MW: 50362.1 Da    PI: 4.339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G25040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.3e-4961331128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhPtd elv++yLk+k+ gkk  + ++i++v++yk+ PwdLp + ++++++ ew+fF++rdkkya+g+r+nr+t +gyWk++gkd+++   
  OB05G25040.1   6 LPPGFRFHPTDVELVSYYLKRKIMGKKPLV-HAISDVELYKFAPWDLPaQsCLQSRDLEWFFFCPRDKKYANGSRTNRSTPNGYWKTSGKDRTIEL- 100
                   79*************************766.88**************95347778888**************************************. PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++ vg kktL+f++g+apkg++tdWvm ey++
  OB05G25040.1 101 NSRMVGSKKTLIFHEGKAPKGSRTDWVMYEYKM 133
                   999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-583156IPR003441NAC domain
PROSITE profilePS5100556.1646156IPR003441NAC domain
PfamPF023651.2E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAQTFLPPGF RFHPTDVELV SYYLKRKIMG KKPLVHAISD VELYKFAPWD LPAQSCLQSR  60
DLEWFFFCPR DKKYANGSRT NRSTPNGYWK TSGKDRTIEL NSRMVGSKKT LIFHEGKAPK  120
GSRTDWVMYE YKMEDDKLVS AGFSKDDYVL CKIFKKSGLG PRIGEQYGAP FNEEEWEHED  180
AEISMFPLQP ITNVETSVFP LLPSSEVVNS TGDTCVQPSN VARAIEELPV PHLPDVFTGS  240
EPTFQNIAVT DECAPMELPS QYSVESIVDE VVSVNNCSNE VNNADSPIVD GFLLEELSKF  300
LTDSPHRGNP VGEHSGLPPM SEAEAHAFEV STNDLYNEIA GLAESGVPNG DSFSLSNAGV  360
TEYTSQPTTY FGVPSSENYL DMDDLFAPDA SSSYAYPVLN NQFWQYPMDQ SIYDSTQSAA  420
FLSSDLHSTM PNFPAVANYG GLASKPNMQF QLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-49215711169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G25040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3621600.0AB362160.1 Oryza sativa Japonica Group mRNA for transcription factor, complete cds.
GenBankAK0995400.0AK099540.1 Oryza sativa Japonica Group cDNA clone:J013032G17, full insert sequence.
GenBankEU8469980.0EU846998.1 Oryza sativa Japonica Group clone KCS104B01 NAM-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654428.10.0PREDICTED: NAC domain-containing protein 82-like isoform X1
TrEMBLJ3M7D00.0J3M7D0_ORYBR; Uncharacterized protein
STRINGOB05G25040.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.19e-80NAC domain containing protein 103