PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB05G22440.1

Common Name

LOC102720990

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 550aa MW: 57725.9 Da PI: 7.1132

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB05G22440.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	241.3	4.1e-74	153	548	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaN 99 L +cAea++ + e a+a La + laspdgd++qR+aa f+eALa+ +r ++++++ ps+ s++ e++aa+ f +++P+l ++ ++ N OB05G22440.1 153 HLRRCAEALAVSRSEDADAELASIALLASPDGDAVQRMAAAFAEALARVALRPWKGIAAMAFPSDGSDRPrAWEAAAARMNFLNLCPVLHLAAVAVN 249 5889****************************************************98866666655526666666666************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 + Ile + +++ + ++D++ + +QW+ Ll+aLa+R+e+ p lR+T+v++ +k+ l + + + +++gvp++ +++ +++l +l+l++L v OB05G22440.1 250 EIILETTRNDRFIQVVDLGGVHYGQWVDLLHALATRRESRPCLRLTVVHE----DKQFLYQASLVIMSESDRVGVPLDLHIVESSSLLALKLDSLGV 342 **********************************************....9**********************9999******** PP GRAS 197 kpgEalaVnlvlqlhrll......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +++ a+++ + l+lh l + s++l++ d++L+ + lsPk+++v+e+ea+h ++sF+erf++al yy lf s+ OB05G22440.1 343 RSDHAVVIVSTLKLHPLIgtgndtaaaasaaaggmasslpSPSTTLTN-VDKLLRGFHLLSPKLMIVTENEASHFGPSFMERFASALGYYEQLFTSV 438 *******************************9888655555555.99****************************************** PP GRAS 272 eaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse.kaakqaklllrkvk..sdgyrveee.sgslvlg 361 e++ ++ +r+ Er+ll++ei++++ace r +rhe+l +W +r+ +aGF p s+ a++ ++++ ++++ ++ y v e sg+lvl OB05G22440.1 439 EEGSAAYGgepAQRKEAERFLLREEIKDIIACEDGPRWARHERLVRWIARIAAAGFVFSPTSSgAAVERVRSVAARMPggEKVYGVAEAgSGWLVLR 535 665333223459*****************************************9998872567889999999986444599997769** PP GRAS 362 WkdrpLvsvSaWr 374 +++p++svSaWr OB05G22440.1 536 REEKPMFSVSAWR 548 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.528	124	524	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-71	153	548	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MEKMGVSSTS VNASAPMLGQ AADVPTANFQ LFGSMLPVPA ASMATATAPA PTADNGASGS 60 VAAGAAAQNA SGSVQGQGDG MSLSLQLWPV GSTTAAVSSP PVAPVTGPGP AAVMPAPLAM 120 AAAENASLAA VANALALRRK NVATQRSTAL LGHLRRCAEA LAVSRSEDAD AELASIALLA 180 SPDGDAVQRM AAAFAEALAR VALRPWKGIA AMAFPSDGSD RPRAWEAAAA RMNFLNLCPV 240 LHLAAVAVNE IILETTRNDR FIQVVDLGGV HYGQWVDLLH ALATRRESRP CLRLTVVHED 300 KQFLYQASLV IMSESDRVGV PLDLHIVESS SLLALKLDSL GVRSDHAVVI VSTLKLHPLI 360 GTGNDTAAAA SAAAGGMASS LPSPSTTLTN VDKLLRGFHL LSPKLMIVTE NEASHFGPSF 420 MERFASALGY YEQLFTSVEE GSAAYGGEPA QRKEAERFLL REEIKDIIAC EDGPRWARHE 480 RLVRWIARIA AAGFVFSPTS SGAAVERVRS VAARMPGGEK VYGVAEAGSG WLVLRREEKP 540 MFSVSAWRRR

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MEKMGVSSTS VNASAPMLGQ AADVPTANFQ LFGSMLPVPA ASMATATAPA PTADNGASGS  60
VAAGAAAQNA SGSVQGQGDG MSLSLQLWPV GSTTAAVSSP PVAPVTGPGP AAVMPAPLAM  120
AAAENASLAA VANALALRRK NVATQRSTAL LGHLRRCAEA LAVSRSEDAD AELASIALLA  180
SPDGDAVQRM AAAFAEALAR VALRPWKGIA AMAFPSDGSD RPRAWEAAAA RMNFLNLCPV  240
LHLAAVAVNE IILETTRNDR FIQVVDLGGV HYGQWVDLLH ALATRRESRP CLRLTVVHED  300
KQFLYQASLV IMSESDRVGV PLDLHIVESS SLLALKLDSL GVRSDHAVVI VSTLKLHPLI  360
GTGNDTAAAA SAAAGGMASS LPSPSTTLTN VDKLLRGFHL LSPKLMIVTE NEASHFGPSF  420
MERFASALGY YEQLFTSVEE GSAAYGGEPA QRKEAERFLL REEIKDIIAC EDGPRWARHE  480
RLVRWIARIA AAGFVFSPTS SGAAVERVRS VAARMPGGEK VYGVAEAGSG WLVLRREEKP  540
MFSVSAWRRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-25	156	494	25	329	Protein SCARECROW
5b3h_A	3e-25	156	494	24	328	Protein SCARECROW
5b3h_D	3e-25	156	494	24	328	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB05G22440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692579.1	0.0	PREDICTED: scarecrow-like protein 3
TrEMBL	J3M6M0	0.0	J3M6M0_ORYBR; Uncharacterized protein
STRING	OB05G22440.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16942	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	3e-32	RGA-like protein 3

Link Out ? help Back to Top
Entrez Gene	102720990