PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G15280.1
Common NameLOC102714095
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 197aa    MW: 21645 Da    PI: 6.2648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G15280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30104162159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDg++WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver++ed ++v++tY g Hnh 
  OB05G15280.1 104 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVERDREDHRYVITTYDGVHNHA 162
                   59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-3292164IPR003657WRKY domain
SuperFamilySSF1182901.96E-2796164IPR003657WRKY domain
PROSITE profilePS5081131.42299164IPR003657WRKY domain
SMARTSM007742.5E-34104163IPR003657WRKY domain
PfamPF031062.9E-23105161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAASVGLNPE AFFSSSCSYS SSSSPFMASY GPELRAATTV AVEADFFGEL DFDYSLPAPV  60
FTGSGDEYPE NNKNIMMMCG NEEKITARVN GRIGFRMRSE VEILDDGFKW RKYGKKAVKN  120
SPNPRNYYRC STEGCNVKKR VERDREDHRY VITTYDGVHN HASPAAALQY AGDYYTSPPG  180
SAGSPPSAPY SAGSLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2590165378Probable WRKY transcription factor 4
2lex_A1e-2590165378Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G15280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0662521e-102AK066252.1 Oryza sativa Japonica Group cDNA clone:J013052M10, full insert sequence.
GenBankCT8328021e-102CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence.
GenBankHQ8588751e-102HQ858875.1 Oryza sativa Japonica Group isolate UT1752 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654120.11e-145PREDICTED: probable WRKY transcription factor 51
TrEMBLJ3M4K41e-144J3M4K4_ORYBR; Uncharacterized protein
STRINGOB05G15280.11e-145(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-39WRKY DNA-binding protein 50