PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB05G11980.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 327aa MW: 36298.1 Da PI: 5.8614

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB05G11980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.8	8.1e-20	55	119	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +W++ e+ a +++r ++++++ ++k++k+lWe+ ++++++ gf+r+p qCk+kw+nl +r+k ++ OB05G11980.1 55 QWSHAETAAFLAIRADLDHSFLSTKRNKALWEAAAARLHALGFSRTPDQCKSKWKNLVTRFKGTE 119 7*************************************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	3.12E-22	54	119	No hit	No description
Pfam	PF13837	4.9E-15	55	118	No hit	No description
PROSITE profile	PS50090	7.306	56	112	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDPFHHLNSS FSNPYHPLLA SPPHHFAPDP LPPPPPPLLP DPPPSSSADR ERLPQWSHAE 60 TAAFLAIRAD LDHSFLSTKR NKALWEAAAA RLHALGFSRT PDQCKSKWKN LVTRFKGTEG 120 ALAVAPDQIM LQGGAAAARG ASTAASPSSF PFHDELRRIF DARVERARAL ERKKVKGKEP 180 DEQDDGGGEG DEEDDEEAEQ AEEDDGDGAS GDTTRSGSKK RRRKAVAAAA AARRTSGSGG 240 VEGEVEAMLR EFMRRQLEME ERWMEAAEAR EAERRAREEE WRTXXXXXXX XREREDAWRA 300 RAEEREERRH QLVAALLAKL NAGDASA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	223	KKRRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB05G11980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692464.1	1e-136	PREDICTED: trihelix transcription factor GT-3a-like
TrEMBL	J3M3M4	0.0	J3M3M4_ORYBR; Uncharacterized protein
STRING	OB05G11980.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12595	31	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	4e-20	Trihelix family protein