PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G11740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21223.1 Da PI: 7.7365 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.4 | 2.4e-43 | 34 | 133 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h++FGasn++kll++lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ lka+la++ OB05G11740.1 34 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHRVFGASNIIKLLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQLARA 130 7***********************************************************************************************9 PP DUF260 98 kee 100 ++e OB05G11740.1 131 HAE 133 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.436 | 33 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-43 | 34 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MGSSSDTACT VATAPPSPAS PPATATTTTV VLSPCAACKI LRRRCVDRCV LAPYFPPTEP 60 HKFTTAHRVF GASNIIKLLQ ELPEEQRADA VSSMVYEANA RIRDPVYGCA GAICQLQKQV 120 NDLKAQLARA HAELAGXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXAGG 180 MQASPIGWVD EPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-45 | 25 | 134 | 2 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-45 | 25 | 134 | 2 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G11740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 8e-95 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654943.1 | 1e-94 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 8e-59 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | J3M3K0 | 1e-102 | J3M3K0_ORYBR; Uncharacterized protein | ||||
STRING | OB05G11740.1 | 1e-103 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-57 | LOB domain-containing protein 11 |