PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G10490.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 383aa    MW: 42379.2 Da    PI: 8.1799
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G10490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001380102323
                   ET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                   C+  +Cgk+F +   L++H  +H
  OB05G10490.1  80 CSyeNCGKTFVDVAALRKHAHVH 102
                   77779**************9887 PP
2zf-C2H218.65e-06107131123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   y C+   Cgk F ++s LkrH   H
  OB05G10490.1 107 YICQepGCGKKFVDSSKLKRHHLIH 131
                   889999***************9988 PP
3zf-C2H2193.9e-06137161123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   + Cp   Cgk Fs   nL++H++tH
  OB05G10490.1 137 FICPhpGCGKAFSLDFNLRSHLKTH 161
                   789*********************9 PP
4zf-C2H216.62.2e-05167191123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   ++Cp   Cgk+F++ s Lk+H + H
  OB05G10490.1 167 HVCPfpACGKRFTSDSKLKSHVKGH 191
                   789999***************9988 PP
5zf-C2H212.70.00037244269123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   ++Cp   Cgk + + + L+ H +t H
  OB05G10490.1 244 FVCPydGCGKAYIHGYKLNLHFKTqH 269
                   89********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-1273102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40678107IPR007087Zinc finger, C2H2
SMARTSM003550.01678102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-781131No hitNo description
Gene3DG3DSA:3.30.160.606.5E-13104127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.066107136IPR007087Zinc finger, C2H2
SMARTSM003550.0012107131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.95E-12118170No hitNo description
Gene3DG3DSA:3.30.160.603.0E-18128162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.822137166IPR007087Zinc finger, C2H2
SMARTSM003550.0011137161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8165191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367167196IPR007087Zinc finger, C2H2
SMARTSM003550.012167191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169191IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-6170191No hitNo description
SuperFamilySSF576671.26E-6239267No hitNo description
Gene3DG3DSA:3.30.160.601.6E-8240269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.035244269IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85244277IPR007087Zinc finger, C2H2
PROSITE patternPS000280246269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
WSTLRGRGRG RGEGGDPPRP AARWVKHWIP QDLATSSGKG KCALFKWVRE DVYKNLKDGT  60
GAAEAEAVKT EPTTEILFLC SYENCGKTFV DVAALRKHAH VHNERQYICQ EPGCGKKFVD  120
SSKLKRHHLI HTGQKDFICP HPGCGKAFSL DFNLRSHLKT HALENYHVCP FPACGKRFTS  180
DSKLKSHVKG HEKTGTPITA QYMPASDKPQ ICTKPVTPAA TKPVTTAATK PTAPSPASFA  240
ERPFVCPYDG CGKAYIHGYK LNLHFKTQHP EHGQEENGKI AAPAGEHAVN DRANHYNYAE  300
TGDLAPNPKR SKTNSVHKTP SSKVYNVKIS SASPADISGV KNQWPGKYED DSEETEEDQG  360
NNIEDGWRYG NQNADDEETE YED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34801938119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G10490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034440.0AK103444.1 Oryza sativa Japonica Group cDNA clone:J033129E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692445.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
TrEMBLJ3M3750.0J3M375_ORYBR; Uncharacterized protein
STRINGOB05G10490.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.19e-98C2H2 family protein